Panicum virgatum (switchgrass): 120678599
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Entry
120678599 CDS
T07260
Name
(RefSeq) serine/threonine-protein phosphatase PP1-like
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120678599
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120678599
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120678599
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120678599
03041 Spliceosome [BR:
pvir03041
]
120678599
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120678599
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
120678599
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120678599
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120678599
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120678599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
Motif
Other DBs
NCBI-GeneID:
120678599
NCBI-ProteinID:
XP_039815785
LinkDB
All DBs
Position
6N:complement(4448544..4449772)
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AA seq
225 aa
AA seq
DB search
GEAPCGGVGRRPQPAPLLRPGRGGFQVASLLQLHYLFLGDYVDRGKQSIETICLLLAYKI
RYPDNFFLLRGNHECASINSIYGFYDECKRRFSVRLWKLFTDCFNCLPVAAVIDDKILCM
HGGLSPDLDSLARIRDIQCPVDVPDQGLLCDLLWSDPDRDSSGWGDNDRGVSFTFGADKV
SRILAAHGGPASRSGDGNGWGKGRWQFRWCILQWCRQCIIQWCHS
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
ggggaggccccgtgtggcggtgtgggtcgccgtccacagcctgctccactccttcgtcca
ggccgaggcggcttccaggtggccagcttgctccagctccactacctgttcctgggcgac
tacgtggaccgcggcaagcagagcatcgagaccatctgcctgctgctggcgtacaagatc
cggtacccggacaacttcttcctgctccggggcaaccacgagtgcgcctccatcaacagc
atctacggcttctacgacgagtgcaagcgccgcttcagcgtccgcctctggaagctcttc
accgactgcttcaactgcctccccgtcgccgccgtcatcgacgacaagatcctctgcatg
cacgggggcctctcgccggacctcgacagcctcgcccggatcagggacatccagtgcccc
gtcgacgtccccgaccagggcctcctctgcgacctcctctggtccgaccccgaccgcgac
agctccggctggggcgacaacgaccgcggcgtctccttcaccttcggcgccgacaaggtc
tcccgcatcctcgccgctcacggcggcccagcatctcggagtggtgatggcaatggatgg
gggaagggaagatggcaatttcgctggtgcatcctccagtggtgccgccagtgcatcata
cagtggtgccattcctag
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integrated database retrieval system
