Panicum virgatum (switchgrass): 120678608
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Entry
120678608 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 29-like
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120678608
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120678608
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120678608
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120678608
NCBI-ProteinID:
XP_039815795
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All DBs
Position
6N:complement(36324431..36331511)
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AA seq
826 aa
AA seq
DB search
MDAAADPNTEPQRRPKRERSAGGGGSKKSGGSKKAKSGGFETMGLCEEVYRGVRHKGYRV
PTPIQRKTMPLILAGADVAAMARTGSGKTAAFLLPMLHRLRRRDPGAGVRALILSPTRDL
AMQTLKFTNQLGKFTDLRTCVIVGGDSMESQFEELAECPDIIIATPGRLMHHLNDVKDMT
LRSVQYVVFDEADSLFTMGFAKHLHDILKKLSDTRQTLLFSATLPKALADFAKAGLRDPQ
MVRLDLDKKISPDLKLVFFTLRQEEKLAALLYLVRERISSEEQTIIFVSTKHHVEFLNIL
FREEGLEPSLSYGAMDQEARMIHISKFRARKTMLLIVTDVAARGLDIPLLDNVVNWDFPA
KPKLFVHRVGRVARQGRSGTAYTFVTSEDMPYLLDLHLFLSRPLKPAPTEEELLKDMDGI
NMKIDQAIANGESVYGRFPQTVLDLVSDGIKEVISSCTELIALEKPCANAFRLYLKTRAM
PSKESIKRAKDLPREGLHPIFRDVLRSDELSALAFSERLKSFRPKQTILEAEGEAAKARN
SKGSNQWLDVMKKKREVHEGIINLVHQKSSVDPRPEEEEDDISNWEKKEVCGTKRKSQSF
RDEDCYISSVPQNQHLEDGLSVRNNEGFVENRLDAAVLDLVDDEASGMQTQKTRYHWMKN
KFVKLNSGDRVTATGKIKTEGGAKIKASATGIYKRWQQRTHKSINIGGKSGNFAEEGTSS
AGGYHGGNKKHFPGGRGCKFIPNANVPSEIRNPEQMQKSRHQKAMEITRLKNKSAKDGKF
QKNRRPDGRGRGRGNGKGAGKGGFGKGKGPGKGGKGKGKVKGKGGR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcggcggacccgaacacagagccgcagcggcggccgaagcgggagaggtcg
gcgggcgggggcggcagcaaaaagtccggcgggagcaagaaggccaagtcgggcgggttc
gagacgatggggctctgcgaggaggtgtaccgcggggtgcgccacaaggggtaccgcgtg
cccacgccgatccagcgcaagaccatgccgctcatcctcgcgggcgccgacgtcgccgcc
atggcccgcaccggctccgggaagaccgccgcgttcctgctgcccatgctgcaccgcctc
cgccgccgcgacccgggcgccggcgtccgcgcgcttatcctctcccccacgcgcgacctc
gcgatgcagacgctcaagttcaccaaccagcttggcaagttcacagacctcagaacctgc
gtaattgttggtggcgatagcatggagagtcagtttgaggagctggcagagtgccctgat
atcataattgccacgccaggcaggctcatgcaccatttgaatgatgttaaggacatgact
cttcgttcagtgcaatatgttgtgtttgatgaagccgattccttgtttacaatggggttc
gcaaagcacctgcatgatattctaaagaagctaagtgatacgcgacaaacattgctcttt
agtgccactttgccgaaagcccttgcagactttgcaaaagctggtctgcgtgatccacag
atggtcaggctcgatttggacaaaaagatcagtcctgatctcaagcttgtcttcttcacg
ctgcgccaggaagagaagcttgctgcattactgtatttggtcagggagcgcatcagctcc
gaggagcagacaataatttttgtttcaaccaagcatcatgtagagttcttgaacattttg
ttcagagaagagggtttagaaccttccctatcctacggtgctatggatcaagaagctcgt
atgatccatatttcaaaattcagggcaaggaagaccatgctacttattgtgacagatgtt
gctgcaaggggcctggatattccattgctggataatgtagttaactgggacttcccagca
aagcctaagttatttgttcatagagttggtcgagtagctagacaaggtagaagtggaaca
gcatatacatttgtcacctcagaggacatgccatacttactggacctgcatcttttcctt
tcgaggcctctcaaacctgctccaacagaagaggagcttctaaaagacatggacggcata
aatatgaaaatcgatcaagccattgcaaatggggaatcagtgtatgggcgttttcctcaa
acagtccttgatcttgtctctgatggaataaaagaagtcattagtagttgtacggagctg
attgcattggaaaagccatgcgctaatgctttcagattgtatctgaagactcgtgctatg
ccttctaaagaatctatcaaaagggcaaaagatttacctcgtgagggtcttcatccaatt
ttcagggatgttcttcggtcagatgagctttcagctcttgcattctcagaacgcctgaaa
tcatttaggccaaagcagactattttagaggctgaaggtgaagctgctaaagcaagaaac
tctaagggttctaatcaatggctagacgtgatgaagaagaaacgagaagttcatgagggg
attataaatttagttcatcaaaagagttctgttgatccaaggccagaggaggaagaggat
gacatttcaaattgggagaagaaagaagtttgtggtacgaagcggaagtcacagagcttt
agggatgaggactgctacataagttcagtacctcagaaccaacatttggaagatgggttg
tcagtgaggaataatgaaggatttgttgaaaatagattggatgctgctgttcttgattta
gttgatgatgaagcctctggtatgcaaacacagaaaactcggtatcactggatgaagaac
aaatttgtcaagttgaacagtggggatcgtgtgacagctactggaaagattaaaacggaa
ggtggtgcaaagataaaggcatccgcaactgggatctataagagatggcagcagaggaca
cacaaatctatcaatattggtgggaaatctggcaactttgcagaagagggcacatccagt
gcaggtggctatcatggagggaacaagaaacacttcccaggtggccgaggatgcaagttc
ataccgaacgccaatgtgccctctgagataaggaaccccgagcagatgcagaagagcagg
catcagaaggcgatggagatcacgcggctgaagaacaaatccgcgaaggacggcaagttc
cagaagaacaggcggcccgacgggagggggagggggagggggaacgggaaaggagctggg
aaaggagggtttgggaaagggaaagggcccggtaaaggagggaaaggcaagggcaaagtg
aagggcaagggcggcagatga
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