Panicum virgatum (switchgrass): 120678639
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Entry
120678639 CDS
T07260
Name
(RefSeq) nuclear poly(A) polymerase 4-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120678639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120678639
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
120678639
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
120678639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
120678639
NCBI-ProteinID:
XP_039815824
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All DBs
Position
6N:complement(37326362..37334898)
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AA seq
695 aa
AA seq
DB search
MAGSVGVGRAAPRSSPKRYAGTDPPLSLAGPTMADLQRTAELEKFLVEAGLYEGKEESAK
REEVLSEIGQIVKEWVKHLTRKKGYAEQLVERANAVLFTFGSYRLGVHGPGADIDTLCVG
PSYVNREEDFFVTLHGILAEKEEVTELQPVPEAHVPVLKFKFRGISIDLLYASLSLSVIP
VDFDISQGSVLCDVDEATVRSLNGCRVADQILRLVPNAENFRTTLRCLKYWAKRRGVYSN
ITGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCAIENDDLGFSI
WDPRKNPCDRNHLMPIITPAYPCMNSSYNVSTSTLRVIMKQFQFGNKICQEIDLNKANWS
ALFEPFHFFEAYRKFLVVDIVADDDDDLRLWKGWVESRLRQLTLKIERDTKGILQCHPYP
CEYSDPAIECAHCAFYMGLSRKEGLKKRGQQFDIRGTVDEFMREIGMYSLWKPGMDLAVT
HVRREQVPSYVFQQGYKKPSPRMHANQQEQSDGDGTLSPDLEGQLKRKYDSDGDGLAELR
KSVKRASVSPPGDETPPHHGNSVSQVLCDSPVKLVSSALCSGALTSPSHDDVTFEPTALT
SSPHGSEDTSASGTSCAAVEAVVLADESSKLVNLTCDVEVDTVQTMDVHTTSEFVAQKNG
TKVEGIRSLASSNCAEFLEREVLAENMHLSGDEVI
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgggatctgtcggcgtgggcagggcggcgccgcggtcgtcaccgaagcggtacgcg
ggcaccgacccgccgttgtctcttgccgggccgacgatggcggatctccagaggacggcc
gagctggagaagttcttggttgaagcaggactttacgaagggaaggaggagtctgcgaag
agggaagaggtgctgtccgagattggtcagatagtcaaggaatgggtgaagcacttgact
cgtaagaaaggatatgctgagcaattggttgaacgagcaaatgcagtccttttcactttt
gggtcttacagattgggggttcatggacctggagctgatattgataccctttgtgttgga
ccttcatatgtgaaccgagaggaggatttctttgtcacactgcatgggatattagcagaa
aaggaagaagtgactgagttgcaacctgtacctgaagctcatgtacctgttttgaaattt
aagtttcgtgggatatcaattgaccttctctatgctagcctctctctttcagtaatacca
gtagattttgatatttctcaaggatctgtgctttgtgatgttgatgaagcaactgttcga
agtcttaatgggtgcagagtggcagatcagattcttcggcttgttccaaatgctgagaac
ttccggacaacactcagatgcttgaagtactgggcaaagagaaggggtgtttattctaat
attactggtttccttggaggtgtcaactgggctctgctggttgctcgtgtctgccaactc
tatcctaatgctgtgccaagtatgctggtttctagattcttcagagtttttacccagtgg
caatggccaaatccagtaatgctatgtgcgattgagaatgatgatcttggtttttctata
tgggatccacgcaaaaatccttgtgatagaaaccatctaatgcccatcatcactccagcc
tatccatgcatgaactctagctacaatgtttcaaccagcacactgagggttataatgaag
caatttcagtttggcaacaaaatttgtcaggaaattgaccttaataaggccaattggagt
gctttatttgagcctttccatttctttgaggcatatagaaagtttctagtggttgacata
gttgcggatgatgatgatgatcttcggctttggaagggatgggttgagtctcgtttgaga
caacttactttaaagattgagcgggatactaaaggaattctgcagtgccatccttaccca
tgtgagtattcagatcccgcaatagaatgtgcacattgtgcattctacatgggcttatca
aggaaagaggggttgaaaaaacgtggtcaacaatttgacatccgtgggacagtagatgaa
tttatgcgtgaaattggcatgtattcattgtggaagcctgggatggatctggctgtcacc
catgtccgtagggagcaggtcccatcttatgtatttcagcaaggatacaagaaaccctct
cctaggatgcatgcaaaccaacaggagcagtctgatggagatggcacactgagtccagat
ctggagggtcaacttaagagaaagtatgattctgatggagatggccttgcggaacttcgt
aaatctgttaaaagggcttcagtaagcccacctggtgatgaaaccccacctcatcatgga
aatagtgtcagtcaggtcctatgtgacagtccagtgaaattagtttccagtgcactttgc
agcggggctctgacttctccgtcacatgatgatgtaacttttgaaccaactgcattaact
agttcaccacatggatctgaggatacctcagcatcaggcacaagctgtgcagcagtggaa
gcagttgttttggctgatgaatctagtaagcttgttaacctgacatgtgatgttgaagtt
gacacagttcagacgatggatgtgcacacaacttcagaattcgtggctcagaagaatggg
acaaaggttgagggaatcagaagcttggcgagcagcaattgtgctgagtttctagagagg
gaagttcttgctgagaacatgcacttgagtggagatgaagtgatttga
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