KEGG   Panicum virgatum (switchgrass): 120678644
Entry
120678644         CDS       T07260                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvir03009]
    120678644
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    120678644
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 Beta-prop_LRRK2 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_Nup120_160 Beta-prop_RIG_1st WDR54
Other DBs
NCBI-GeneID: 120678644
NCBI-ProteinID: XP_039815829
LinkDB
Position
6N:complement(24532513..24539310)
AA seq 429 aa
MAPPPPPPKQLVLAASSADAGVAAWDLRTGAEEIRHRPCASRPRALTSVADRFLAAAQAP
PAGGNSGTVHFYHWDKPQVAVKSFPAEPIRALLADQEGSYLIGGGSNGNLFLWEVASGEL
LQTWHAHYRAVRCLALYDYLLVSGSEDGSIKVWDLITVLDEQSRLEAQTPYLYSFNQHAL
PVTDIACFLGAIAVSSSEDRTCKIWSLSEGRMLRSIPFPTSIDSVALDPRSHVFYAGGRD
GKIYVTAMGVDISSHGSDESAILGALDDQSKAVTSLASSTDGLLLVSGSEDGNVRVWDTR
SQQVTRKFKHSQGPVTNVLIVTPKRVILPPLHPLRKVCSANGEVEPRAVILPRPENDVPI
HGNRTSIFMEHYLDELQKYGGTSLIFGSGLRTQNCTPNQQGTEWRDRYLELRDLFLHEVL
DQMPSSRNP
NT seq 1290 nt   +upstreamnt  +downstreamnt
atggcgccgcctccgccgccgccgaaacagcttgtgctggctgcgtcctccgcggacgcc
ggcgtggccgcctgggacctccgcaccggcgcggaggaaatccgccaccgcccctgcgcc
tcccgccctcgcgcgctcacctcggtcgccgaccgcttcctcgccgctgcacaggcccct
cccgctggcggcaactccggcaccgtccacttctaccactgggacaagccacaggtggcc
gtcaagagcttccccgctgagcctatacgcgcgcttcttgcggaccaggaggggagctac
ctcattggcggtggcagcaacggcaacttattcctttgggaggtggctagtggagagctt
ctccagacatggcatgcacactatcgtgctgttaggtgcctcgcgctttatgactatctg
cttgtctcaggatcagaggatggaagcatcaaagtctgggatctgatcacggtgcttgat
gagcagtcaaggttggaggcccagacaccatacctctacagtttcaatcagcatgcactg
cctgtaactgatattgcttgtttccttggagcaattgctgtatcttcttcagaagatcga
acctgcaaaatctggagtttatctgagggtaggatgctaagaagcattccattccctact
agcattgattctgtagcactagacccaagaagtcatgttttctatgctggtggtagagat
ggaaagatatatgttactgcaatgggtgttgatatcagttctcatggtagtgatgagtca
gctattcttggtgctttggatgaccaaagcaaggcagtaacaagcttggcatcaagcaca
gatggacttttactagtttctggatctgaggatggtaatgttcgggtatgggatactaga
agtcagcaagtaacccgaaaattcaaacactcccaaggtccagtaaccaatgttctgata
gtaacaccaaaacgtgtaatcctgcccccactacatccattgcggaaagtttgctcagca
aatggtgaagttgaaccacgtgctgtaattctgcctcggcctgaaaatgatgttcctatt
catggaaatcgaacctcaatttttatggagcactacttggatgaacttcagaagtatggt
ggtacgtctttgatatttggttctggtctgcgtactcagaattgcacacctaaccaacaa
gggacagaatggagagatagatacttggagctgcgggatctctttttgcatgaggtccta
gatcagatgccgtcctctaggaacccatga

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