Panicum virgatum (switchgrass): 120678740
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Entry
120678740 CDS
T07260
Name
(RefSeq) transcription factor CSA-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120678740
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120678740
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
DUF6581
Motif
Other DBs
NCBI-GeneID:
120678740
NCBI-ProteinID:
XP_039815994
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Position
6N:complement(38923640..38927688)
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AA seq
364 aa
AA seq
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MPCSSPAPTWLLRVGPATDQASSYSSSKGGGRVLTAGTSTMDTGTTAGAARCGGGGGGNA
HASDHQESSSSGQSRLAARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLR
WFNQLDPRISKRPFSDEEEERLMAAHRFYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY
REQSTAYRRRKLNQVVQRKLEAATAAVAAMPPAAGPGGDAGHHHHHLLAAAHDAAYGFAD
PYGFSFRHYCSYPFPPGAAAAAEDPPPPPPFCFFPGPGGAAAHADMRLPWVPSSDGAGGG
GRNGEPPPLLLPVPGGGWVEGVGVGGAAAAFQATATRQGGGGAHFDAAAAPSPAFIDFLG
VGAT
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgctcttcgccggcgccgacgtggctgctgcgcgtggggcccgcgaccgaccag
gcctcgtcctactcctcgtccaagggcggcggccgcgtgctcacggccggcaccagcacc
atggacacgggcaccaccgcgggggcggcccggtgcggaggcggcggcggcggcaatgcg
cacgcgtccgaccaccaggagagcagcagcagcgggcagtcccggctcgcggcgcgcggc
cactggcgccccgccgaggacgccaagctccgggagctcgtcgcgctctacgggccccag
aactggaacctcatcgccgagaagctcgacggcagatccgggaagagctgccggctccgg
tggttcaaccagctggacccgcggatcagcaagcgccccttcagcgacgaggaggaggag
cgcctcatggcggcgcaccgcttctacggaaacaagtgggccatgatcgcgcgcctcttc
cccggccgcaccgacaacgccgtcaagaaccactggcacgtcatcatggcgcgcaagtac
cgcgagcagtccaccgcctaccgccgccgcaagctcaaccaggtcgtccagcgcaagctc
gaggccgccaccgccgccgtcgcggcaatgccgccggccgccggccccggcggggacgcc
ggacaccaccaccaccacctcctggccgcggcgcacgacgccgcctacggctttgccgac
ccctacggcttcagcttccgccattactgcagctacccgttcccgccaggcgccgccgcg
gcggccgaggacccgccgccgccgcctcccttctgcttcttccccgggcccggcggcgcg
gcggcgcacgccgacatgcgcctcccctgggtgccgtcgtcggacggcgccggcggcggc
ggtcggaacggggagccgccgccgctcctgctgcccgttccgggcggcggctgggtcgag
ggcgtcggcgtcgggggcgccgcggctgcgttccaagccacggcgacaagacagggcggc
ggcggcgctcacttcgacgccgccgcggcgccgtcaccggcattcatagacttcctcggg
gtcggagccacatga
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