Panicum virgatum (switchgrass): 120678765
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Entry
120678765 CDS
T07260
Name
(RefSeq) chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like
KO
K27707
chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120678765
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120678765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
Motif
Other DBs
NCBI-GeneID:
120678765
NCBI-ProteinID:
XP_039816031
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All DBs
Position
6N:complement(31553416..31557645)
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AA seq
743 aa
AA seq
DB search
MAPPPLPLFSPSPKPPPPPPWLHGPSTQNHNPSPSPAAPPPPAEAAPPNKPRHHGPKPAP
ARNTGGKAAAKPLTAGVPGGRTRRAVLGIIRRVRSLELSDPPRPVPASNDAAAAVPFHLP
IQPREQGREAVEKGKPRAVPWAAARDEGLKLALRREKKAREPTRAETELAAGELDRLRHV
ARGMGRWARAKKAGVTEEVVDDLRREWARGEELAAVRIVEPLCRNMDRAREILEIKTGGL
VVWTKGDIHFVYRGSNYQQNTNHSHYFVSDAQNMKHNVPTTQLEYGNEGEMLTNANSKAD
DAFQEKYQSICGQNDEEPVKGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEFVP
GFKTPFRQCPPGVRPTLADEELTYLRKLAQPLPTHFALGRNTRLQGLAAAILKLWEKSLI
AKIAVKVGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQ
VHDEQVKEEEARLKAVDSLQMVGGLSSEESSVGTFREYQNFQADHVHGNTENSNTIIELE
AEKHRLEKELKDQEWKLSILNKKIERSNQALAKLHNSWSPLEESADKELLTEEEKAMFRM
IGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGI
LIAVEKLPTSHSIILYRGKNYHRPEKSSSSNLLTKREALRRSIEVQRRGSMKYFARERQK
SILELKRRLRYVARQIKYRTPRS
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccccgccgctgcctctcttctccccgtccccgaagcccccgcctccgccgcca
tggctgcacggcccctccacgcaaaaccacaacccctcccccagccccgcggcgcccccg
ccccccgccgaggcagctcctcccaacaagccccgccaccacggccccaagccggcaccg
gcgagaaacaccggtggcaaggcggccgccaagcccctcaccgccggcgtccccggcgga
cgcacccgccgtgctgtcctcggcatcatccgccgcgtccgctccctcgagctctccgac
ccgccgagacccgtccccgccagcaacgacgccgccgccgccgtcccattccacctcccg
atccagccgcgggagcagggccgggaagcggtggagaaggggaagccgcgggcggtgccg
tgggcggcggcgagggacgagggcctcaagctcgcgctgcggcgtgagaagaaggcgagg
gagcccacgcgcgcggagacggagctggcggccggcgagctggaccggctgcggcatgtg
gcgcgcgggatgggcaggtgggcgcgggccaagaaggccggggtcaccgaggaggtggtg
gacgacctgcgccgggagtgggctaggggcgaggagctcgccgccgtgcgcatcgtcgag
ccgctgtgccggaacatggaccgcgccagggagattctggagataaaaacaggaggctta
gtagtttggacaaaaggagacatacattttgtttacagaggaagcaattatcagcaaaac
acaaatcatagtcactattttgtgagtgatgctcaaaatatgaaacacaatgttcctaca
acccagcttgaatatggtaacgaaggtgaaatgctaaccaatgctaatagcaaagcagat
gatgctttccaagaaaagtatcaaagcatttgtggtcagaatgacgaagaacctgtcaag
ggaactctctatgagagagaagtcaacagattattggacagtttgggccctcgatttgtt
gattggtggtggaacacaccattgcctgtggatgctgatctactcccggagtttgttccg
ggctttaagactccgtttaggcagtgccctcctggtgtgagaccaacactagcagatgag
gagctgacatacttgcgcaaacttgcacagcctttgccgacacattttgcccttggtaga
aatacaagactgcagggtttggctgctgctatactgaagctttgggaaaaaagccttata
gcgaaaattgcggtgaaagtgggtatccaaaatacaaacaatgaacaaatggcatggaac
cttaagcatcttacaggaggcactgtaatattgagaaacaaggattttattattctatat
agaggcaaggattttcttcctggtggagttgctcaaactgtaattcaacgagaggctcag
gtacatgatgaacaagtgaaggaagaagaagctcgactgaaagcagttgactctcttcag
atggtcggtggattgtcatcagaagaaagttctgtaggaactttcagggagtatcagaac
ttccaagctgaccatgtgcatggaaatactgaaaactccaacaccatcattgaactagag
gctgagaagcatagattggaaaaggaactgaaagaccaagaatggaagctttccattctt
aacaagaagattgaaagatccaaccaggcactggcaaagcttcacaattcttggagccct
ttagaggagtccgcagacaaagaactcttgacagaagaggaaaaggcgatgttccgcatg
attggccgtaaaatggatggtcttgttcttctaggaaggcgtggcatctttgatggtgta
attgaagagattcatcaacactggaaacataaagaggttgtgaaagtaattacgaagcag
aatcaagcccgccaaatcatgtacacagcaaatctgctcgaggttgaaacaggtggtatc
ctaatagctgtagaaaagcttccgaccagccattccataatactttaccgtgggaaaaac
tatcaccgcccagaaaaatcatcatccagtaatcttctaacaaaaagagaagcactgcgc
agatcaattgaggtccaacgacgagggtcaatgaaatactttgctcgggaaagacaaaag
tccattttggaactgaaaaggagactgagatatgtggcaaggcaaatcaagtatcgaacc
ccaagatcatga
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