Panicum virgatum (switchgrass): 120678780
Help
Entry
120678780 CDS
T07260
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120678780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120678780
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120678780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
120678780
NCBI-ProteinID:
XP_039816063
LinkDB
All DBs
Position
6N:6490287..6516121
Genome browser
AA seq
755 aa
AA seq
DB search
MEVNSSGEEMVVKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ
IRSHAQKFFTKEDEISEEVSWPDILISKDLECLAFHRSSLKRSGAIMCMDSVMHEFNVPQ
LEKEAMNNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSGLSSETPSKEVPNDKSTKSNMTV
GNGNVQMAGDASLQKFQRKEVSEKGSCSEVLNLFRDAPSASFSSVNKSSSNNGVPRGIEP
TKKEIRDVTTMEKNSISPTMQEDVKEINDQEMGRVNGIHVSSKCDHSNEEYLETTYVDKQ
TARTSHTLVERNGATSIPVTGTKGTHPDQTSDQVGVNGSMNPCIHPMLSMDPKFDSSATP
QSFAHNYAAFAPMMQCNCKQDTYRSFVNMSSTFTSMLVSTLLSNPAIHAAARLAASYWPA
AEGNTHVDPNQENPGEGVQGRNLGSPPSMASIVAATVAAASAWWATQGLLPFLAPPMAFP
FVPAPSAAFPTADVPRPSEKDRDCLVENAQKECQEAQIKGQSEALRVVVSSESDGSRKGN
MSIHTEFKISPVQNAEATPTTGADTSDALRNKKKQDRSSCGSNTPSSSDVEAENVPEKED
KSNDKAKQASCSNSSAGDTNHRRFRSSGSTSDSWKEVSEEGRLAFDALFSREKLPQSFSP
PQAEKSKEVANEEEDEVTTVTVDLNKNATSIDHELDMMDEPRTSFPNELSHLKLKSRKTG
FKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaattcctctggtgaggaaatggtggtaaaggtaagaaagccgtacacaata
acaaagcaacgcgagcggtggactgaggcagagcacaaacgcttccttgaagccttgaaa
ctttatggcagagcatggcagcgcatagaagagcatgttgggacaaagacggctgtgcag
attagaagtcacgctcaaaagttcttcaccaaggaagatgaaatttctgaagaggtctca
tggccggatatattaatcagtaaggatcttgagtgtcttgcctttcatagaagtagcctc
aaaagatctggtgctatcatgtgcatggatagtgttatgcacgagttcaatgtgcctcag
ttggaaaaggaagctatgaacaatggtacttctccggggcaagctcatgacattgacata
cctccaccacggcctaaaaggaagcctaacagtccgtatcctcgaaaaagtggtctcagc
tctgagacaccatcgaaggaagttccaaatgataagtcaacaaaatcaaatatgacagta
ggcaatggcaatgtacaaatggcaggcgatgcatctctgcagaaatttcagaggaaggag
gtgtctgaaaaaggaagctgctcggaagttcttaatctcttccgagatgccccatctgca
tcattttcttcagttaacaaaagctcttcgaataatggtgtacccagggggattgaacca
accaaaaaagaaatccgagatgtgactaccatggaaaagaattcaattagtcccaccatg
caagaggatgtaaaagagataaatgatcaggaaatgggaagggttaatggaatccatgtc
agttctaaatgtgaccattctaatgaagaatatttggagacaacatatgtggacaaacaa
actgcaagaacttcacataccctggtggagaggaatggtgcaactagcattcctgtcact
ggaaccaaaggaactcatcctgatcaaacaagtgatcaagtgggagtcaatggaagtatg
aatccatgcatccatccaatgctttctatggatccgaaatttgatagcagtgccacacca
cagtcttttgctcataattatgctgcctttgctccgatgatgcagtgcaactgcaagcaa
gatacctacagatcattcgtgaacatgtcatccaccttcaccagcatgcttgtttccaca
ttgttgtcaaaccctgccatccatgcagccgctaggctcgcagcatcgtactggccagct
gcagaaggtaacactcatgttgatccaaatcaagaaaatcctggggagggtgttcaagga
agaaacttaggctctcctccaagcatggcttctattgtagcagctacagttgctgcagca
tctgcatggtgggcaacacaaggtcttctcccttttttggctccccccatggcttttcca
tttgtaccagctcctagtgctgcctttcctacagcagatgttccacgaccttcagagaaa
gacagagattgcctggttgaaaatgcacaaaaggaatgccaagaagctcagataaaaggc
cagtctgaagctttgagagttgttgtatcttcagagtctgatgggagtagaaaaggcaac
atgtctatccatactgaatttaagatatctcctgtccagaatgctgaagccacacctacc
acaggagctgacacaagtgatgcattgaggaataagaaaaagcaggatcgctcttcatgc
ggctccaacacgccttcaagtagtgatgtagaggcagaaaatgttcctgagaaagaagac
aagtctaacgacaaggcaaagcaagcctcctgcagtaactcttcagctggtgacactaat
caccgcaggtttagaagcagtggaagcacaagtgattcgtggaaggaagtttcagaagag
ggtcgtctggctttcgatgcactgttcagtagagaaaagcttccacaaagcttttctcct
cctcaggcagaaaaatcaaaagaggttgccaatgaggaggaagatgaagtgaccacagtt
acggttgacctcaacaagaacgccacaagcattgatcatgagctcgacatgatggatgag
ccaagaacttccttccccaatgaattgtcacacctgaagcttaaatcacgcaaaacaggc
ttcaaaccatacaagagatgttctgtggaagcgaaggagaacagggtgccggctagcgac
gaggttggtaccaagaggatccgtcttgagagcgaagcatcaacctga
DBGET
integrated database retrieval system
