Panicum virgatum (switchgrass): 120678802
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Entry
120678802 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120678802
09124 Replication and repair
03420 Nucleotide excision repair
120678802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120678802
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120678802
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120678802
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120678802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
120678802
NCBI-ProteinID:
XP_039816115
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Position
6N:5879730..5893660
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AA seq
601 aa
AA seq
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MGSMTIGAKYKTTLKDPGTPGVLRMNDEKFTFTPNDPRSAMKLNVDFRSIKGHKFNKVDG
NKPALLNLSKDSDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGVVPPRPTAAPENTVAS
AGLEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDQANKASKQ
RPGFKTAMSDVRPSADGRTNKVTFNLTTEMIHQIFAEKPAVRRAFLDFVPKKLTDKEFWT
KYCRAQYLLRTKNSVAATAEAAEDEELAVFLKNDDILAKEAKLKIKQVDPTLDMEADAGD
DYIHLPDHGILRDGSKETLDTDSELAKRTLSQDLNRHAAVVLEGIASDVELTDAKSVAEA
LARSKKEPPSTSTVDDSSHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQAN
ALRSLGGSNDGRKARNCSLSTEEAFHHLTDQISSIKVNKLDYPVIQSDMALKVLNELNEG
ISRSRRLNLKNPQEGLLGRVPQHTRDELMDHWTAIQELLRHFWSSYPITSAVLYNKVQRV
KDAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQKSAKAGNKPNG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccccg
ggcgtcctccgcatgaacgacgagaagttcactttcacccctaatgatccgcgctcggca
atgaagctcaatgttgatttccgaagcattaaaggtcacaagttcaataaagtagatggc
aacaaaccagcattattgaatctttcaaaagattctgacaagggtggaggctacatgttt
gagtttgacaatgttggtaaccgtgacctatgtcgagattttgtagctagggttttaggc
aaacatcaaggggtagtgccccctcgaccaactgcggctcctgaaaacacagttgcttct
gctggtctggaacagctcagtgctgctgaagtggaacggcgggtgaaactgttgagagaa
gacagtgaattgcagaaattgcataagaagtttgttcttggaaacattctgcaagaatct
gaattttgggcaacaagaaagaatttgctagatgatcaagcaaataaagcatctaaacaa
aggccaggcttcaagactgcgatgtcagatgttaggccatcagccgatggtcggacaaac
aaggttactttcaatctcacaactgagatgatacatcagatttttgcagaaaaacctgct
gttcgtcgagcatttttagattttgttcccaaaaagttgacagataaagaattttggaca
aaatactgtagagctcagtatctgctcaggacaaaaaacagtgtggcagcaacagctgag
gctgctgaagatgaggaattagctgtcttcctgaagaatgatgatatactggccaaggag
gcaaagttgaagataaaacaagttgatccaacgttagacatggaggcggatgctggagat
gattacatccatcttccggatcatgggattctccgtgatggtagcaaagagacacttgac
actgacagtgagttggcaaagaggacactgtctcaggacctgaatcgtcatgccgctgtc
gttcttgaagggatagcttcagatgtggagcttactgatgcaaagagtgtagctgaagcc
cttgcaaggtccaagaaggaaccaccttccacttctactgttgatgattctagccacgag
agactagtaaaggtggccagaatgacggagatagaggatctgcaagctccacgaagcctt
ccgtatgcaccactttgtataaaggatcctagggagtattttgattcccaacaagcaaat
gctctgagatctttaggtggcagcaatgatggaagaaaagcccgtaattgcagcttgagc
actgaagaagcgttccatcatttaacggatcaaatatcttctattaaagttaataagttg
gactatccagttatacagtcagatatggctcttaaggttcttaatgaattgaacgaaggg
atttcacgttcaaggagactgaacctcaagaatcctcaagagggtctccttggtcgagtg
cctcaacatacgcgggacgagcttatggatcactggacagctatccaggaattgctacgc
catttttggtcatcatatccaataacaagtgcagtcctctataataaggttcaaagagtt
aaagacgcaatgacacagatatatcaaaagttgcaggctataaaggaatcagcacagcct
gatgtaaggcatgaaatatctcggctagtaaaaccaatgactcaggccttggacgcggcc
ttcagccatgatctggagcagcagcagaaatcggcgaaggccgggaacaaacccaacggg
ttttga
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