Panicum virgatum (switchgrass): 120678806
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Entry
120678806 CDS
T07260
Name
(RefSeq) probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic isoform X1
KO
K14652
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:
4.1.99.12
3.5.4.25
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00740
Riboflavin metabolism
pvir00790
Folate biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01240
Biosynthesis of cofactors
Module
pvir_M00125
Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00740 Riboflavin metabolism
120678806
00790 Folate biosynthesis
120678806
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.25 GTP cyclohydrolase II
120678806
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.12 3,4-dihydroxy-2-butanone-4-phosphate synthase
120678806
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Motif
Pfam:
DHBP_synthase
GTP_cyclohydro2
Motif
Other DBs
NCBI-GeneID:
120678806
NCBI-ProteinID:
XP_039816120
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Position
6N:complement(44765199..44769179)
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AA seq
547 aa
AA seq
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MASFAPPSTASCARINGRYRTSGLPCDTSLLPNAASNSLRIIRSIRLENTHRFRNLHVSY
AGGDSSENIIINGKTNPSNLVQADAVALGTIAADMAPVVDGFSANDDELDLDSPTKGFSS
IPEAIEDIRQGKYVIVVDDEDRENEGDLIMAASKVTPEAMAFIVRHGTGIVCVSMKEEDL
ERLQLPLMVTTKENEEKLRTAFTVSVDAKEGTTTGVSAKDRANTILALASPNSKPEDFNR
PGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLPPVAVLCEIVDDDDGSMALLPKLQQFA
KRENLKIISIADLIRYRRKRDRLVECVCVTPLQLQWGSFKAYCYRSLIDGMEHIAMVKGD
VGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMTMIEKTGRGVVVYLRGHEGRGIGL
GHKLRAYNLQDDGRDTVEANLELGLPADSREYGIGAQILRDLGVRTMRLMTNNPAKYTGL
KGYGLSVLGRVPLLTPITNENRRYMETKRLKMGHVYGTHPSGHHTNGSGMTDGGTKGEAG
QEQTPES
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcctcattcgcgccgccgtccacggcgtcgtgcgctcgcatcaatggtaggtacagg
acttctgggttgccttgtgatacttcgcttctgcccaatgctgcatcaaacagtttaagg
ataatcagatccattcgcttggaaaatacccaccgattcagaaacctccatgtatcttat
gctgggggtgattcatcagagaatattattataaatgggaaaaccaatccatctaattta
gttcaagcagatgctgttgcacttgggaccattgcagctgatatggctcctgttgttgat
gggttttctgctaatgacgatgagcttgacttagacagcccgacaaagggtttctcatct
atacctgaagctattgaggacattcgtcaaggaaaatacgtcattgttgtggatgatgaa
gacagagagaatgaaggtgatcttataatggcagcatcaaaggtcacacctgaagctatg
gcttttattgtgaggcatggcactgggattgtttgtgtcagcatgaaagaagaggatctg
gaaaggctacaacttcctctcatggtgacgacaaaagaaaatgaagagaaactgcgaact
gccttcactgtttcagtggatgccaaagagggaacaacaactggggtttcagctaaggac
cgggcaaacacaatactagcacttgcatctcctaattccaagcctgaggacttcaaccgg
ccaggacatatttttcctcttaaatatagagaaggtggtgtgctgaaaagggctggacat
actgaagcatcagtggatcttgccatgttggctgggttacctcctgttgcagttctttgt
gaaattgttgatgatgatgatggctccatggctttgttaccgaaactgcaacaatttgct
aagagggagaacctgaagataatatcaatcgcagatctgataagatataggaggaagaga
gacagattggtagaatgtgtttgtgttacacctttgcagttgcaatggggatcgtttaaa
gcctattgctatagatctcttattgatgggatggaacacattgccatggtgaagggtgat
gttggcgatggccaggatatcctagtaagagtgcattcggaatgcctaactggggacata
tttggatctgcaaggtgcgactgtgggaatcaacttgctctggcaatgaccatgattgag
aaaaccggtcggggtgtagtagtttatcttcgtggtcatgaaggcaggggtattgggctg
ggtcacaagcttcgggcttacaacttacaggatgatggacgggatactgttgaggctaac
ttggagctagggctgcctgctgactctagggagtatggcataggtgcacagatactacgc
gatcttggtgtcaggactatgcggctgatgactaacaaccctgcgaaatacactggactc
aagggttatggtttaagtgtcctgggcagagtgccgttgcttacaccaataaccaatgag
aatcggcgctatatggaaacgaagcgactaaagatggggcatgtttatggaacccaccct
agtggtcatcatacaaatggtagtggcatgactgatggtggcacgaaaggggaggcaggg
caagagcaaactccagaatcttaa
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