Panicum virgatum (switchgrass): 120678819
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Entry
120678819 CDS
T07260
Name
(RefSeq) vacuolar sorting protein 18-like isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120678819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120678819
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120678819
Hops complex
120678819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
zf_RING_Vps8_fungal
Nup54_57_C
zf-RING_UBOX
zf-rbx1
zf-RING_2
zf-C3HC4_2
zf-ANAPC11
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
120678819
NCBI-ProteinID:
XP_039816139
LinkDB
All DBs
Position
6N:8980557..8991882
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AA seq
1003 aa
AA seq
DB search
MDGGGGGGQLFSVDPLERQAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDYTFEDAHDLD
LGSGRSGDHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWPRPKPLPRLRGLLVNAVA
WNRQSITEASTKEVILGTESGQIFEMAVDEADKREKYVKPLFQLTEQREGIKDLQMETAV
VGNSTRYYVMAVTPTRLYSFTGIGSLETVFTSYSDRAIHFMELPGEIPNSELHFFIKQRR
AKHFGWLSGSGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGDSGTKPRSFALSEFH
FLLLIGDKIKVVNRISQQMVEELVVDNTPETSRGIIGLCNDASTGLFYAYDESSIFQIST
SDEGRDMWQVYLDMNHYAAALSHCRNPFQRDQVYLVQADAAFAAKEYYIAASFYAKMNYI
LSFEEISLKFISIGEQPSTMSTWQDALRTFLLRRLDNLTKDDKMQITMISTWATELYLDK
INRLLLEDSTGTTTNSVAEPNSSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDE
LVYFAGLKEQFEIVVHHYIQQGEARKALEVLQQRNVPVDLVYKFAPDLIMLDAYETVESW
MMVRNKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFYVKDLENKDPGVHNLLLSLYAK
KEDESQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLKEKRMRACVRIYSMMSMHEEAVA
LALKVDLELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNL
LKIEDILPFFPDFVLIDDFKEEICKSLKDYNSQIELLKQEMDDATRGADNIRSDIGALAQ
RYTVIDREQDCGVCRRKILTVGGLHQVGRSYTSVGNMAPFYVFPCGHAFHANCLIGHVTR
CSSQAHAERILDLQKRLSLMDRKAAKDNGSNVNGESIMSTTPVDKLRSQLDDAVASECPF
CGDLMIKEISQPFILPEESDEKASWEIKPQPMPQKILPMTMSI
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggcggcggcggcggccagctcttctccgtggaccccctggagcgccaggcc
gcgcggggccacggcgtcgtcacctccatggccgccggcagcgacgtcatcgtgctcggc
acctcccgcggctggctcgtccgccacgactacaccttcgaggacgcccacgatctcgac
ctggggagcggccgctccggcgaccactcggtgcaccgggtgttcctggaccccggcggc
aagcactgcgtcgccacggtggtccacccgggcggcgcggagacgtactaccaccacgca
aggtggccgcgccccaagccgctcccccgactccgcggcctcctcgtcaatgctgtcgcc
tggaaccgccaatccatcacggaagcatcgaccaaggaggtgatcctgggcactgagagc
gggcagatctttgagatggctgtggatgaggccgacaagagggagaagtatgtgaagccg
ctcttccagctcactgagcaaagagagggcatcaaggatctgcagatggagactgctgtg
gttggaaattccacaaggtactatgtgatggccgtcactccaacacggctttactcgttc
acaggcattggttcattagaaactgtttttactagttactcagatcgtgccatacacttt
atggagctcccaggagaaatacctaacagtgagttacatttctttatcaagcaaagaagg
gctaaacacttcggatggctttctggatctggaatttatcatggtgaactgaattttgga
gcgcaacacagctctactagtggagatgagaactttgtggaaaataagggtttttttgac
tactcaaaattgggagattctggaactaaaccaaggtcatttgcattgtctgaattccat
tttctgcttctgattggggacaagattaaggtagtgaacagaataagccagcagatggtg
gaggaacttgtagttgacaatacacctgaaacttcaagaggaatcattggcctctgtaat
gatgcatctacaggacttttctatgcatatgatgaaagttctatattccagatttccact
tctgatgagggtcgtgacatgtggcaagtttacttggatatgaatcattatgctgctgct
ttatcacattgtcgcaaccctttccagcgggaccaagtctatctagtgcaggctgatgct
gcatttgctgcaaaagagtattacatagcagcttccttctatgctaagatgaattatatc
ctatcgtttgaggagatcagcctgaagtttatatcaataggtgagcagccgtcaactatg
tctacatggcaggatgctctcagaactttcttgttgagaaggcttgacaacctcactaaa
gatgacaagatgcagattacgatgatctcaacttgggctactgagctgtacttagacaag
attaatcgcctcctgttggaagatagcactggcaccactacaaattctgtagcagagcct
aatagctcagaatatcgttcaatagtaaatgaattccgtgcttttcttagtgacagcaaa
gatgtattagatgaagcaacaacaatgagactattggaaagttacggaagagtggatgag
cttgtgtactttgctggtttgaaggagcaatttgaaattgtggttcatcattacattcag
caaggagaagcaagaaaagcattggaagtgcttcaacagcgcaatgttcctgtagacctt
gtgtataaatttgccccagatttaatcatgttagatgcttatgagactgttgaatcttgg
atgatggtgagaaacaagttgaatccggggaaactcataccagcaatgatgcgttatgtg
agcgaaccacatgcgaagaacgaaacacacgaggttattaaatacctagaattttatgtg
aaagatttggagaacaaggaccctggagtgcataatctgttgctatcactgtatgccaag
aaggaagatgaatcccagcttttgcaatttctcgacaccaaatttggtaaaggacaaaca
aatggccctgaattcttttatgatcccaagtatgctctccgcctatgtcttaaagagaag
agaatgcgtgcttgtgttcgtatttacagcatgatgtccatgcatgaggaagctgtggca
cttgctttaaaggtggacttagaacttgcaaaggcagaagctgacaaagtagaagatgat
gaagagcttaggaagaagctgtggcttaaggttgcgaagcatgtaattgagcaagagaaa
ggtgtcaagagagaaaatataaagaaagcaatagaattcctttcggagaccaataacttg
ttaaagattgaggatatcttaccatttttcccagacttcgtattgattgacgacttcaaa
gaggaaatatgcaaatctctcaaggactataacagccagattgagctgctgaaacaggag
atggatgatgccacacgtggggcagacaatatcagaagtgatattggtgccctcgctcag
agatatactgtaattgatcgtgagcaggattgtggggtttgccggcgtaaaatattgact
gttggagggttacaccaggtaggaagaagctacacgtctgttgggaacatggcccctttt
tacgtgtttccctgtggacatgccttccatgcgaattgcttgattggacatgtaactcgt
tgcagtagccaggcgcacgctgagagaatattggaccttcagaaacggcttagcttgatg
gatagaaaagcagcaaaagacaatggatcaaatgttaatggtgaatctattatgagcaca
accccagttgacaagcttaggtcacagttggatgatgctgtagcaagtgagtgccctttc
tgcggcgacctgatgatcaaggagatttcacagccattcattctcccagaagagtcagat
gaaaaggcatcatgggaaattaaaccacaaccaatgcctcagaagattctccccatgacc
atgtctatatga
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