Panicum virgatum (switchgrass): 120678866
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Entry
120678866 CDS
T07260
Name
(RefSeq) DNA repair protein RAD4-like isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
120678866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120678866
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
120678866
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
120678866
NCBI-ProteinID:
XP_039816217
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Position
6N:37804692..37810598
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AA seq
862 aa
AA seq
DB search
MRRTRSQSASGARAEPSPSAGPSAEAATGGAGRRRASPAAKGESPAVVEAGSPLGNTRKK
GRAKAEPQDNSSVERRGAGSLEKNNLEEQAEAVFDNDAAGMDWEEGHVERNEYFCEPGET
VTVEFNDDVPSSTSKKTVRRATAEEKELAELVHKVHLLCLIARGRVVDKACNDPLIQASI
LSLVPNHLLWSVADVRNLKAINLRNLLSWFHRTFCVTAQSTDRGSFVSNLGFTIQDRVGT
AEEVCALSVALFRALNLTARFVANLDVAGLKPDTKVMGTLNQDASRLCTRSLPHSSPAAG
GNVVSSPALLKDNAQDSVSMNQQRGSLGKPKQTSACKRSLSKTLSSIKAGTESSCISASS
QLLSTSGNTEVPKRKGDVEFELQLEMALSATAAENQNNNQANHMTQSIGSLQDSTPMKKL
CQNTEVTSSSSAVWSRSAGAPLYWAEVYCSGQASTGRWVHVDVVNDLLDAERKVEVSSAV
CKKPLRYVVAFAGNGAKDVTRRYCLQWHRIAQGRVNPEWWENVLAPLKQMELTATNNSED
MELQTRALTEPLPTSQQAYKDHHLYALEKWLHKNQILHPKGPVLGFCKGHPVYPRSCVQT
LQSRHGWLREGLQIQENELPAKVVTRPKRTFNAQSVQSSANEDALKPTLELYGEWQLEPL
QLPHAVDGIVPKNERGQVDVWSEKCLPPGTVHLRLPRLFQVAKRLGIDYAPAMVGFDYRS
GRCLPVFDGIVVCTEFKDAILEAYAEGEEQRRAEERKQEEAQALSRWYQLLCSIVTRQRL
KDSYKTPSHGLGHEEPLGNDIIQKNTRSSQRSERVPSSSKPQTDHDHEHVHEYLEEDQTF
DEETFVRTKRCPCGFSIQVEEL
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggaccaggagccagtccgcgagcggggcgcgagcggaaccctcgccctctgcc
gggccaagcgcggaggccgcgaccggcggggcgggtcgccggagggcttcgccggcagcg
aaaggggaatcgcctgccgtggtggaagcgggatcaccacttggcaacacacgtaaaaag
ggcagagccaaggcagagccacaggataattccagcgttgagaggcgtggtgcagggagc
ctcgaaaagaacaatttggaggagcaggcagaggctgtttttgacaatgatgcggctggc
atggactgggaagagggacatgtggaacgcaatgagtatttctgtgagcccggagagact
gtcactgttgagttcaatgatgatgtgccttcttccactagcaagaagactgttcggagg
gctactgctgaagagaaggagttagctgaacttgtgcacaaggtccatttgctttgccta
atagcaaggggtagagtagttgacaaggcttgcaatgatcctcttattcaggcctcgatt
ctttctcttgtaccgaaccatttactttggagtgttgctgatgttcgaaatctgaaagct
attaacctacggaatcttttgagctggttccatcgtactttttgtgtaaccgcacaatcc
actgacaggggttcttttgtatcaaatttgggtttcactattcaagatcgtgtaggcact
gcagaagaggtttgtgcactttcagtggcattgttcagggcacttaacttaacagcaagg
tttgttgcaaatctggatgttgctggactcaaacctgatactaaagtgatgggaacactc
aatcaagatgcatctaggctttgtacaaggtcactaccgcatagttctccagctgctggt
ggtaatgtggttagttcccctgctctactgaaagataatgctcaagatagtgtcagcatg
aatcaacaaagaggcagtcttggaaaaccgaaacagacctctgcttgcaagagaagttta
tctaaaactttgtcaagcataaaagcaggtactgaaagtagttgcatatcagccagcagc
caacttctatccacttctggtaatactgaagtaccaaaacggaaaggggatgtcgaattc
gagttgcaactggaaatggctctttcagctacagctgctgaaaaccaaaataataatcaa
gctaatcatatgacacaatcgattggtagcttacaagattctactccaatgaagaaattg
tgtcaaaatacagaagttacatcaagttcaagtgcagtttggtcaagaagtgctggagct
ccattatattgggccgaggtatactgcagtgggcaggcatcaacaggaagatgggtgcat
gttgatgttgtgaatgatctccttgatgctgaacgcaaagtagaagtttcttcagctgtt
tgcaagaagcctttaagatatgttgttgcttttgctggaaatggagccaaggatgtaaca
agaaggtattgcttgcaatggcacagaattgcacaggggagagtgaatccagagtggtgg
gagaatgttttggcaccactaaagcagatggagctgacagcaacaaacaattctgaagac
atggaacttcaaaccagagccctaacagaacctcttcctaccagtcaacaggcctacaaa
gaccatcatctatatgctcttgagaagtggcttcacaagaaccaaattcttcaccccaaa
ggtccagttcttggcttctgcaaagggcatcctgtttatccaagatcatgtgttcaaact
ctgcaatcaagacatggatggttgagggagggcctgcaaatccaagaaaacgagttgcct
gcaaaggttgtcacacgtccaaagaggactttcaatgctcagtcagttcaatcaagtgct
aatgaggatgctcttaagccaaccttggaactatatggtgaatggcaactggaaccgctg
caacttcctcatgctgtagatggcattgtgccaaagaatgaacgaggccaagttgatgtg
tggtcggagaagtgccttccacctggtacagtacacttgaggttaccaagattattccag
gttgcaaagagacttggtatcgattatgctcctgccatggttggatttgattatcgaagt
ggccggtgccttccagttttcgatggaattgttgtctgtactgaatttaaggatgctatc
ctggaggcatatgcagaaggagaggagcagagacgagctgaggagaggaagcaggaggaa
gctcaagcactctccagatggtatcagttgctctgctccattgtaacaaggcagaggttg
aaggactcgtataaaacaccttcacacgggcttggccacgaggagccgctcgggaatgat
attatccagaaaaacactcgcagcagtcaacgctcagaaagggtgcctagttcaagcaaa
ccgcagacagatcatgaccatgaacatgtgcacgagtacctggaggaagaccagaccttt
gacgaggagacctttgtgcggacgaaacgttgcccatgtgggttttcaatccaagtagag
gagttgtag
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