KEGG   Panicum virgatum (switchgrass): 120678970
Entry
120678970         CDS       T07260                                 
Name
(RefSeq) protein RAE1-like isoform X1
  KO
K14298  mRNA export factor
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120678970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120678970
   03036 Chromosome and associated proteins [BR:pvir03036]
    120678970
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120678970
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120678970
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 NBCH_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_BBS7 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 120678970
NCBI-ProteinID: XP_039816373
LinkDB
Position
6N:complement(8853451..8860257)
AA seq 343 aa
MASLTGLTANPNPNKSFEILPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGNSQP
KVSISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPQTVAMHDAPVKEIAWIPQ
MNLLVSGSWDKTLRYWDTRQANPVHIQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNP
QTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGND
IFSVNSLNFHPVHHTFVTAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAY
AVCYDWSRGAENHNPAAAKTSIYLHSPQESEVKGKPRIATGRK
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggcgagtctgaccggcctcaccgcgaaccctaacccgaacaagtcgttcgagatcctg
cccaacccgggtgactccgtctcgagcctcagcttcagccccaagagcaatctgctggtg
gcaacctcctgggataaccaggtgaggtgctgggagattgttggcgggaacagtcagccc
aaggtgtccatatcgcatgatcagccggtcctctgctcagcatggaaggatgatggaaca
actgtcttctctggaggctgtgacaagcaggtcaaaatgtggcctctactgtcaggtggg
cagcctcagacggttgcgatgcatgatgcgcctgtcaaggagatcgcgtggattcctcaa
atgaatcttcttgtctctggaagctgggataagactctgaggtactgggacacaaggcaa
gcaaatcctgtgcatatccagcaacttccagaacgttgctatgctcttacagtgaattac
ccccttatgattgtgggaactgctgatcgtaatcttgtagtcttcaacttgcagaatcct
cagacggagttcaagcgtattcaatcaccactaaaataccagacacggtgccttgctgca
ttccctgatcaacaaggatttctggttggctcgatagaaggaagagttggtgttcaccat
atcgatgattcacaacaaagcaagaatttcactttcaaatgtcacagggaaggaaatgat
atattctctgtcaattcactgaacttccaccctgtccatcacacatttgtaactgctgga
tctgatggtgctttcaacttctgggataaggacagcaagcagaggctgaaggcttttagt
agatgccctcttcccattccttgcagcacctttaacagtgatggttccatatttgcttat
gcggtctgctatgattggagccgtggggctgaaaaccacaaccctgcagctgcaaagaca
tccatctacctccacagtccacaggaatctgaggtcaaaggaaagccgcggattgcaaca
ggcaggaagtga

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