Panicum virgatum (switchgrass): 120679098
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Entry
120679098 CDS
T07260
Name
(RefSeq) probable U3 small nucleolar RNA-associated protein 7 isoform X1
KO
K14768
U3 small nucleolar RNA-associated protein 7
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120679098
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120679098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BING4CT
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
WD40
ANAPC4_WD40
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
PROPPIN
Cytochrom_D1
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
120679098
NCBI-ProteinID:
XP_039816538
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All DBs
Position
6N:complement(12296028..12302916)
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AA seq
572 aa
AA seq
DB search
MAASATFMSSAPTTGSCSSGSRSTAQRGQCACNPHVLERELLQQDADDELEMKVEKYSRG
KGADLKALRDKKLKGQLAVKEKLYGQSAKAAAKAEKWLMPSEEGFLEPDNLEKTYRFPQE
SIVKEVDILSSRKPFDMILPVLGPYTIEYTSNGRYMLVGGRKGHLAMMDMLNMDLIKEFQ
VRETVHDVAFLHNEQMYAVAQKKYPYIYNQHGVEIHCLKEHGKALKLQFLPKHFLLASIN
SFGQLHYQDVSTGEMIANYRTGLGRTDVMRVNPYNAVIGLGHADGKVTMWKPTSVKPLVT
MLCHHGPVTAVAFDRGGHLMATAGVDFDRGGHLMATAGVDSKIKIWDLRKYEVIKSYAAP
AQSLDFSQKGLLACSNGSQVEIYRDFGGHDYRLYMKHRMMKGYQFGKVLFRPYEDILGIG
HSMGLSSILVPGSGEPNFDTFIDNPMETTKQKREKEIHALLDKLPPDTIMLNPNFIATVR
APKKKEKKTKKEIEEEMEEAIEATKNTEHKKTKGRSKPSKRAKKKEEDVFRAKRPFLEQS
KEVEGRPDKKQRIGEGVELPKALQRFSKKPQS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcggcgacattcatgtcttcagctcctacaacgggctcctgctcctctggt
tcccgatccaccgcccagcgagggcaatgcgcctgcaacccgcacgttctggaacgggag
ctccttcagcaggatgccgatgacgagctggagatgaaggtggagaagtattcgcggggg
aagggtgctgacctgaaggcgctgagggacaagaagttgaaaggccagctcgctgtaaaa
gagaagctctatggacagtctgcaaaagctgctgcaaaagctgaaaagtggcttatgcct
agtgaggagggtttcttagagcctgacaatttggagaagacatatagatttccacaagaa
tcgattgtgaaggaggtggatattttgagttcaagaaaaccatttgatatgatcttacct
gtacttggtccttatactattgaatacacatcaaatggccgctacatgctagtaggtgga
cgaaaaggccatcttgctatgatggatatgctgaatatggatctgatcaaggaatttcag
gtgagggaaactgttcacgatgtggcattcttacataatgagcagatgtatgcagtcgct
caaaaaaagtacccttacatatataatcaacatggtgtggaaatccattgtctgaaggaa
catggcaaagcgttgaaactccagtttctgcctaaacactttctcttggcttcaataaac
agctttgggcagctccactaccaagatgtaagcactggtgagatgattgcaaattacagg
acaggtctggggcgaactgatgttatgcgggtcaatccctataatgctgtcataggcctc
ggacatgctgatggcaaagttaccatgtggaagccaacaagtgtgaaaccactggtcacc
atgctgtgccatcatggccctgtgactgctgttgcattcgacaggggtggccatcttatg
gcaacagcaggtgttgacttcgacaggggtggccatcttatggcaacagcaggtgttgac
agcaagataaaaatctgggacctgagaaagtatgaggttataaagtcgtatgcagcgcct
gctcaatccttggatttcagccagaagggtctattggcctgcagcaatggatctcaagta
gagatctacagggatttcggtgggcatgattataggctttacatgaagcacagaatgatg
aagggctatcagtttgggaaagttttgttccggccctacgaagatattctggggattggg
cactcgatgggcctttcgtccatccttgttccaggatccggtgaaccgaactttgatacc
tttattgacaatcccatggagactaccaagcagaagcgggagaaggaaattcatgctctc
ctcgacaagctcccgccggacactatcatgcttaatccaaattttatagccactgtcaga
gctccgaagaagaaagagaagaagaccaagaaggagattgaggaagagatggaagaggct
attgaggccacgaagaacactgagcacaagaagacaaagggcaggagcaagcccagcaag
cgggccaagaagaaagaggaggatgttttcagagccaagaggcccttcttggagcaatca
aaggaggtcgaaggacgacctgacaagaagcagcggataggcgaaggggtggaactccca
aaagccttgcagcggttttccaagaagccgcaatcatga
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