Panicum virgatum (switchgrass): 120679131
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Entry
120679131 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120679131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120679131
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120679131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
LBR_tudor
Cadherin_2
53-BP1_Tudor
AAA_22
Motif
Other DBs
NCBI-GeneID:
120679131
NCBI-ProteinID:
XP_039816591
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Position
2K:44263459..44274666
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AA seq
1311 aa
AA seq
DB search
MASRRASNGRSPLVRKQSQITAFFSSSPTPSPSPSAPNKGAFKPSPSPLNPSAARRSTLA
AASPPPPKQPPPPPPAAAAQDEKRPKRDKKDRDAAAPVAAAAAPAAEVVGRRLRVYWPLD
DAWYEGRVDAYDAGSRKHRVKYDDGEEEQVDLGKERFEWAATGEESTPLPARKLRRLRRM
SDTAVAKSPGLVEDGGGDSTEDWKRDTAADEDSEEVELDDEEEEVVAVRSRKGKTRHSLP
MSGSTPSTLGSGLTSASESTISKRKKVDVGSLGCAKKFSFETFNTTGKVDPEVLLSCGRK
EQTTGNANTALTGEAAERFGQRDVEKFKFLGEGRKDAKGRRSGSPGYDPRTLLLPSQFLK
SLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEK
NLSVNLEKLAKKGYRVLVVEQTETPEQLDLRRKAMGIKDKVVRREICAMVTKGTLTEGEH
LLANPDPSYLLSVTESLQQSSNKSQYTCTIGVCIVDVLASKFIVGQFQDDPERQGLCSIL
SEMRPVEIIKPGKMLSPETEKALKNNTREPLINELLPSTEFWDAEKTINEIKKYYSSADK
QNNVDNVPDSLDCLPNLLSELIGAGDKTYALSALGGSLFYLRQTLLDEKIVPYAEFEPLA
CSGIINNIRKHMILDSAALENLELLENIRTGGLSGTLYAQLNHCVTGFGKRLLKHWIARP
LYDRRAILRRQSAIATFKGVDHDYAAQFRKDLCRLPDMERLLARLFSSCDGNKRSSSIVL
YEDASKRLLQQFTAALRGCQQMFHACSSISTLICTEDSVDSQLNDLLSPGKGLPNVSYIL
DRFRDAFDWSEADCKGRIIPLQGCDPEYDATCSAIQEIGSSLKEYLKEQRKLLRCASISY
VDVGKDMYLIEVPESLGGSVPGNYQLQSTKKGFYRYWTPELKELISELSKAEAEKESKLK
GILQNLIQLFVEHHSEWRQLVSVVAELDVLISLAIASNYFEGPSCCPTIKESNGSDDTPT
FHARNLGHPILRSDSLGKGSFVPNHVKIGGPGNCSFIVLTGPNMGGKSTLLRQVCLTIIL
AQIGADVPAENLELSLVDRIFVRMGARDHIMAGQSTFLLELMETASVLSSATKNSFVALD
ELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAVEHKDTKVSLCHMACEVCKG
EGGLEEVTFLYRLTAGACPKSYGVNVARLAGIPVSVLLRANEKSSEFEANYGTRCCVTKD
KNASSQHEDKFSAIRDVLRIVKVWPHPDDQAASISMLREAQKLAKVLAVEG
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaacggccgctcgccgctcgtgcggaagcagagccagatc
accgccttcttctcctcctcgcccacaccctcaccctccccgtccgcgccgaacaaaggc
gcgttcaagccctcgccgtcgccgctgaatcccagtgcggcgcggaggtccacgctcgcc
gcggcctcccctccccctcccaagcagcctccgccgccgccgccggcggcggcggcgcag
gatgagaagaggccgaagagggataagaaggatcgggacgctgctgccccggtggctgcg
gctgcggcgccggcggcggaggtggtgggtaggcggctgcgggtgtactggccgctggac
gacgcgtggtacgaggggagggtggatgcctacgacgcgggctcccgcaagcaccgggtg
aagtacgacgacggcgaggaggagcaggtcgacctcggaaaggagcggttcgagtgggcc
gccacgggtgaggagtccaccccgctgccggcaaggaagctgcggcgtctccgtcggatg
tcggataccgcggtggcgaaatcgccgggtctggtggaggatggcggaggggattccact
gaggactggaagagggatactgcagcggatgaggattcggaggaggtggaactggatgac
gaggaggaggaggttgttgcggtgaggtcacggaaggggaagacgaggcactccttgccg
atgtcaggttcaacgccatcgacattgggctctggtttgacatcagcatcggagtcaaca
atttcgaagaggaaaaaggtggatgtgggttcattgggttgtgctaagaagttcagcttt
gaaacatttaataccactggaaaagttgacccagaagtgctgctgagctgtggccggaag
gagcaaactacagggaatgctaacactgctcttactggggaggcagctgagcgcttcgga
caacgcgatgtggaaaagttcaaattccttggagaagggcgcaaagacgcaaaaggcaga
cgctctggaagcccaggctacgatccaagaacacttttattgccttcccagttcttgaag
agtttaacaggaggacagagacaatggtgggaatttaaatcacaacacatggataaggtt
ctgttcttcaagatgggcaaattctatgaactatttgagatggatgcacatgttggggca
aaggaccttgatcttcagtacatgaagggtgaacaacctcactgtggattcccagagaag
aatttatcagtgaatttggagaaattagctaagaagggttatcgagttctggttgtggaa
cagactgaaacacctgagcaacttgaccttcggcgtaaggcaatgggtataaaggacaag
gttgtcaggcgtgaaatatgtgcaatggtcacaaaagggacactgacagaaggagagcac
ctattggcaaacccagatccatcatatcttctgtctgtgactgaaagtctccaacaaagt
tcaaacaagagtcaatacacttgtaccattggtgtttgcatagttgatgttttggcaagc
aaatttattgtaggacagttccaagatgacccagagcgccaaggattatgttcaattttg
tctgaaatgaggcctgtggaaatcatcaagcctggcaaaatgctgagtccagaaactgag
aaggcattaaagaacaacacaagagagcctttaataaatgagttgcttccatccacggaa
ttctgggatgcagaaaagactattaatgagataaagaagtactacagctcagcagataaa
caaaacaatgtcgacaatgtaccagacagtctcgactgtctgcctaacttattgagtgaa
ttaattggagcaggtgataaaacatatgcgctttctgctctaggaggttccttattttat
ttaagacagacccttctggatgagaaaatagttccatatgctgagtttgagccccttgca
tgctcggggatcatcaacaatatccgaaagcatatgatacttgattcagcagcgctcgaa
aatctagaacttttagaaaatatcagaactggtggcttgtcagggaccctgtatgcacaa
ttgaaccattgtgtcactggttttggaaagaggctgcttaaacattggattgcaaggcca
ttgtatgatcgcagagcaatactacgacgtcaaagcgctattgctactttcaagggagtt
gatcatgattatgctgcccagtttcgtaaggatttgtgtaggctccctgacatggaacgc
ttgcttgcacgtcttttctctagctgtgatggaaacaagagaagctcatcaatcgttctc
tatgaagatgcatcaaagagactgcttcaacagtttactgctgctcttcgtggttgccag
cagatgttccatgcatgttcttcgattagtacattgatatgcacagaagattctgtggat
tctcaactaaatgatttgctctcaccaggcaaagggctaccgaatgtatcctatatttta
gaccgattcagagatgcatttgattggtcagaagcagattgcaaaggtcggatcattcct
cttcaaggttgtgatcctgaatatgatgccacttgcagtgcaatacaggagattggatcc
agtctaaaagaatatctgaaggagcaacggaaacttttgagatgtgcatcgatttcttat
gttgatgttggaaaagatatgtacctaattgaagtgcctgagagcttgggaggttctgtt
ccagggaattatcagttgcagtctacaaaaaagggtttctataggtactggacgccagaa
ctgaaagaactaatatcagaactttcaaaagctgaggcagagaaagaatcaaaattgaaa
ggcattcttcagaatctgattcagctatttgtggagcatcacagcgagtggaggcaactg
gtttctgttgttgctgagcttgatgttttaataagtcttgctattgcaagtaattatttt
gagggaccaagttgctgtccaactatcaaagaatcaaatggctcagatgatactcctact
ttccatgccagaaatcttggacatcccattctaagaagtgattccttgggcaaaggttct
tttgtaccgaatcatgttaagataggtgggccggggaattgcagctttatcgttcttact
ggtccaaatatgggtggtaaatcaactcttttgcgccaagtttgtcttaccattatattg
gctcagattggagcagatgttcctgcagaaaaccttgaactttctcttgttgaccgaatc
tttgttcgaatgggagcaagggatcatattatggccggccaaagtacattcttgttagag
ctcatggaaactgcctcggtgctttcatcagctaccaagaactcttttgtggctttagat
gagcttgggcggggtacatcaacttctgatggacaagctattgcggcctctgttctggaa
tatctagtccatcaggtgcagtgtctaggcttgttttctacacattaccataggttagca
gtggaacacaaggataccaaggtatcgctgtgtcatatggcatgcgaggtatgcaaggga
gaaggaggtctggaagaagtgactttcctttatagattaacagctggtgcatgccccaaa
agctacggtgtaaatgttgctcgattggcaggaatacctgtttcggtgcttctaagggca
aacgagaagtcaagtgaatttgaggccaattacgggacgcgatgctgtgtgaccaaagat
aagaatgccagttcgcagcacgaagataagttttctgccatcagggatgtgttacgcatt
gtgaaggtatggcctcatcctgatgatcaggcagctagtataagcatgctccgtgaagcg
cagaagcttgccaaggtgctggctgtggaaggttaa
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