Panicum virgatum (switchgrass): 120679176
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Entry
120679176 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 2-like isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120679176
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120679176
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120679176
03036 Chromosome and associated proteins [BR:
pvir03036
]
120679176
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M1
120679176
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120679176
Coactivators
SAGA/TFTC/STAGA complex
120679176
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120679176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
120679176
NCBI-ProteinID:
XP_039816616
LinkDB
All DBs
Position
2K:44293853..44315877
Genome browser
AA seq
1383 aa
AA seq
DB search
MAKARKQKGDGGGAGGGGGATVLHQKLCVSIDMENQLIYGYTEIKVLLADNDTFALHADN
MTIRSILVDGETAEFDYSPYWKNEGDQPNWSSISCLKTAADAACSTYTSSLNREAVPNLI
VSYERSVKSITEQQLEENSEKHEENSGRLEEHGLKPVQASDDQIVNGCNGSAMEEQKEKE
NGNEKGKENGIETETEKVKNIKLVHIDYILEKAETSIHFVGNVLHSSSQIRRAHCWFPCI
DSTTQRCPFDLEFTVSMDLIAVSNGDLLYQVLSKEDPTKKTYVYKLNTPVSAHWISLVVG
PLEVLPDGNDISVSHICLSPALSKLRNTITFFHDAYSCYEDYLSTTFPLGLYKQIFLPPE
MTVLPISLGASTCIFSSDILHDEKVIDQIIGTRIKLAYALAKQWFGIYTSAEEANDAEWL
LDGLAGFLTEIFIKRFLGNNEARYRRFKANSTVCESDVSGATALSSPAASSDLYGTQTIG
SYGKVRSLKAVAVLQMLEKQMGPDSFRKILQVIVAPNRASRTLSTKEFRHLANKVGNLER
PFLKEFFPRWVESCGCPVMRLGISYSKKRNMIELAVSRGCTAKATPDSDSHTNGDTREGD
AGWPGMMSVRVHETDGAYDHPVLPMAGEALQVIEIQCHSKVAAKRVWKSKKSTKFDGSDD
NIDVSTQENRTSIESPLQWIRVDPEMEYLAEIHFHQPVQMWINQLEKDKDVISQSQAISV
LEKLPQLSSAVINALNNFLNDTKAFWRVRVEAAYALAVTASEATDFAGLLHLVKFYKSHR
FDADIGMPRPNDFHDIPEYFVLEAIPHAVALVRSSDKNSPKGAIEFILQLLKYNDNNGNI
YSDVYWLSAMVQAIGELELGQQGMGFLSSLLKRIDRLLQFDNFMPGYNGVLTVSCIRTLA
RIARKVSSSICLDRISELIAPFRNMDKPWKVRIEASKVLIDLELHHKGLDAALLLFLKYV
DEEKSLRGAMKLAVHVLRLCQASTVPQFNDQISLTTLIGLLHLLAGAKAYNNVFLRHHVF
CILQVAAGRSPTLFGVPKVVTPPLVVQDICSDHHTKADSSIPQPSRPQEPSSSTPSVHEV
LPTSGPTKDADTISNCSERRNVVKIRVKLTASSSKASDADHRVHSHGGRNENEAGPCSSM
SVDAPMVGATTEPLNVSNHNIEEQNSCHDRESRMSASIGNAKLMGRHEISKELQCTADSR
LDVLPKDQFSPAVNPLGVVDKPGSQLEVVSTSYDGNQAPGSVNGVETKERKKKDKKDKKR
KRDEKRDKKDDPEYLEKKRLKKEKKKMEKESTRKLLEGEGKATPEQQKIVKPSGLQEVLP
ARPPTAPVRSAEPAPSQSAEPAAVRSSEPQISSKETTVDTARTAAKPRIKIKVKPLVRKP
EGS
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggcgaggaagcaaaagggtgatggtggcggtgcaggcggaggcggaggcgcc
actgtgctccaccagaagctctgcgtctccatcgacatggagaaccagctgatctacggg
tacactgagataaaagttcttcttgccgataacgacacatttgctctacatgctgacaat
atgacaatcaggagcattcttgtggatggtgaaactgccgagtttgactattccccttat
tggaaaaatgaaggtgatcaaccaaattggtcttcaatatcatgtttgaagactgctgct
gatgcagcatgctcaacatatacttcgtctttaaatcgagaagctgtaccaaatcttatt
gtgtcatatgagagatcagttaagtcaataactgagcaacagttagaagaaaacagtgaa
aagcatgaagaaaatagtgggaggcttgaagaacatggtttgaagcctgttcaagcttct
gatgatcaaattgttaatggctgcaatggttctgcaatggaagagcaaaaggaaaaggaa
aatggaaatgaaaagggcaaggaaaacggaattgaaactgaaactgaaaaggtgaagaac
ataaaactggttcacatagattatattttggagaaggctgaaactagcattcacttcgtt
ggcaatgttctgcatagcagcagtcagataagacgggcacattgttggtttccttgcatt
gatagcactacacaacgctgtccatttgacctagagtttacagttagcatggatttaatc
gctgtcagcaatggtgacttactttaccaggtcttaagcaaggaagatcctacaaaaaaa
acttatgtgtacaagttgaacactccagttagtgcgcattggatatccttggttgttggg
ccacttgaagttctccctgacggcaatgacataagtgtctcacacatatgtttatcccct
gctttgtcaaagcttcggaacacaatcacatttttccatgatgcatacagctgttacgaa
gactatctttctacaacatttcccttaggtttgtacaagcagatttttctccctcctgaa
atgacagtgttaccaataagcttaggagcctccacatgcatattcagttcagatatcttg
catgatgagaaggttatagatcagataattggcacaagaatcaaactagcttatgccctt
gcaaagcaatggtttggaatatacacaagtgcagaggaagccaatgatgcagaatggctt
ttggatggtttggctggttttcttactgagatatttatcaagcgtttccttgggaataat
gaggcacggtataggcgcttcaaggctaacagcaccgtatgtgagtctgatgttagtggt
gcaactgctttgagctctcctgctgcttcaagtgatctatatggaactcaaacaattggt
tcatatgggaaagttcgttcgttgaaggcagtagctgttcttcaaatgttggagaagcag
atggggccagactcctttcggaagattttgcaggtgatagtggccccaaatcgtgcctcg
agaacacttagtacgaaagagttcagacaccttgcaaataaggttggtaacctcgaacgc
ccattcctaaaggaattctttccacggtgggtcgagtcttgtggatgtccggttatgaga
ttgggaatctcatatagcaaaaaacggaatatgattgaattggccgtttcaaggggttgc
actgcaaaagctacacctgattccgatagtcataccaatggtgacactcgagaaggcgat
gctggatggccaggaatgatgagtgtacgggttcatgaaactgatggggcatacgatcat
ccagttctcccaatggctggtgaagctttgcaggtgattgaaatacagtgccattccaaa
gtagcagcgaaacgtgtttggaaatcgaaaaaaagcaccaaatttgatggttctgatgac
aacatagatgtctctactcaagagaaccgcacaagcatcgagtcgcctttacaatggatt
agagtagacccagaaatggaatatcttgctgagatccactttcaccagcctgttcagatg
tggatcaatcaattggagaaagacaaagatgttatttcacaatcacaggcaatatctgtc
ctggagaaattacctcaactttcttctgctgtgattaatgccctcaataatttcctaaac
gacacaaaggccttctggagagttagagttgaagcggcatatgcattagcagttacagca
tctgaggcaactgattttgctgggctgcttcatcttgttaagttttataaaagccatcgc
tttgatgcagatattggaatgcccaggccgaacgacttccatgatatcccagagtacttt
gttcttgaggcgatcccccatgcggtagctcttgttagatcatcagacaagaatagccca
aagggagccattgagtttattcttcagctccttaagtacaatgataacaacggaaatatt
tactctgatgtgtactggctatctgcaatggtacaagcaataggcgaactggaattaggc
cagcagggcatgggcttcctatcctctctactcaagcgaattgatcgactcttgcaattt
gacaactttatgcctggttacaatggggtcttgactgtcagctgcattcgtacccttgca
cgaatagcaaggaaggtgtcatcttccatatgccttgatcgcatttctgaactaattgcc
ccctttcgcaacatggacaaaccatggaaagttcgaattgaagctagcaaggttcttatt
gatcttgaattgcaccataaaggccttgatgcagctctgctattgttcttgaaatatgtg
gatgaagaaaagtctttgcgaggagcgatgaagttggctgttcatgtcttgcgtttatgt
caagcaagtactgttccccaatttaatgatcaaataagtttgacaactctaattggtctt
cttcacctgcttgctggtgcaaaagcatacaataatgtatttcttcgtcatcatgtgttc
tgcatattgcaagttgctgctggaaggtctccaacattatttggtgttccaaaggttgtc
acgccccctctggtggtccaggacatatgtagtgatcaccacactaaagctgattcctcg
attcctcaaccatcaaggcctcaagaaccttcctctagcactcctagtgtgcatgaggtc
ttacctacctctggacccactaaagatgctgatactatatctaactgcagtgaaagaagg
aatgtagtcaaaattagggtgaagcttactgcatcttccagtaaagcgtcggatgctgac
cacagagtccattcccatggtggaagaaatgaaaatgaagcgggtccatgtagttctatg
tcagtggatgccccaatggttggagccacaactgaaccattaaatgtaagcaatcataac
attgaggaacagaactcatgtcatgaccgtgaatcaaggatgtctgcaagcattggcaat
gctaaactaatgggcaggcatgagatttccaaggaactacagtgtacggctgattcaagg
ctggatgttcttcccaaggatcagttctctcctgcagttaatcctctgggagttgtagac
aagcctggtagtcagcttgaagtagtctccaccagctacgatggaaaccaagctccaggg
tctgtgaatggagtggaaacaaaagagaggaagaaaaaagacaagaaagataaaaagcgg
aaacgtgatgaaaaacgagataagaaagatgatccagagtatctggagaaaaagcgactt
aagaaagagaagaaaaaaatggagaaagagtcaaccagaaagctgctggaaggtgaagga
aaggctactcctgaacagcagaaaatagtgaaaccttcagggttgcaggaagttttgccg
gcaaggccaccaacagctccggtgcgaagtgccgaaccagctccatcacaaagtgctgaa
ccagcggcagtgcgaagctctgaaccccaaatatcaagcaaggagacaactgtagatact
gcacggacagcagccaaaccaaggataaagatcaaagtcaagcccttggtaagaaaacct
gaagggagttga
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integrated database retrieval system
