Panicum virgatum (switchgrass): 120679196
Help
Entry
120679196 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120679196
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120679196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120679196
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120679196
04121 Ubiquitin system [BR:
pvir04121
]
120679196
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120679196
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120679196
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120679196
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120679196
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120679196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Baculo_IE-1
RRM_1
Rtf2
PcfJ
Motif
Other DBs
NCBI-GeneID:
120679196
NCBI-ProteinID:
XP_039816660
LinkDB
All DBs
Position
6N:complement(48759889..48769103)
Genome browser
AA seq
1172 aa
AA seq
DB search
MDRHLQHQLSTTMSDDGDHTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIIDMAEKEE
IEGRCPACRTPYDKDRIVKMAATCERTVAEKNAEKKHKTQKVKPKAVAAAAATTSSIEAK
KHLAGVRVIQRNLVYIVGLPAHLCHESVLERREYFGQYGKVLKVSVSRPTGPPSQQASAN
NNINVYITYAKEEEAIRCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLH
EVGVQEDSFTKDEVISAYTRTRVPQMASSVSQRRAGTVLPPPADDFSYSAVVSAKHTIKN
GTLNTNHQPRLSPPNSSSGRSTLPPASSWGHRDLNARTTANGVTSTQSQTKSKSEPQINS
FSSSSTIASTIIPSSWNDDTSTAPKMSEGRQVSEQDSASKTIEPYKPGIVKESHSLSSLD
IDFSTIPSAWNDDDIVVSDDMSKGSEEIQAAKENGKLTHLASKSPISPKKDLTMNITSKH
PSDFASDLAISKSDVKTGDGDSSVAKITPKSPTSADVNCQTCLAADEKILEDIGPRETDI
EKLSVQISLVKLNGNDEVHHMAGNQNHQPDAIPCTSVIVPIGQNFDRGQSHMKLDELLHS
ENKDMVLSSQYGSDNHLDWTSKQQSCSATSLNDIENSTAITDKLHSRLMDGSDQPSYSSF
AGFSKTLGTSLWNDTESNPTLMIGTRTSSQMQCGFSSIDKPRALLNGDQDGRGTVYAPGN
VSGHPGMGSHQPGAMGSVRSGSVGSYDKTISVNKDESRIISDMFSSEFNLWDDSFSPANN
FVRMLRESENNDVPSTVPSWKSGSGSRESRFSFARQDNQGHLDSSLRNCASDQNFSLLPQ
ISQGNFYQNGCAFQSLENDPSNNNSLAMSDMATTGSSRSKISAPPGFSAPARVPPPGFSS
GFPSQDGLNPPPGFSSGISSLEVSKTPLRLTSPFSSGLSSQDGPNPPSRTFSAFSSGLSL
QDGPNHPSRFPSAFTSGFSSRDGSNQVYGSMYPETLLRDNALGGNSNHYQVPFGRHTNDI
EFNDPAILAVGKGRMPGTGDSGLEMKSTHAFPAHLQTSNNDPRFQLRMQPNVQSHQNLRF
TDHMHDAFNPMNDNYLASRFLQQSHGPVSPYAQMPQQPRNSQLTNGHLDGWSDLRQGNNN
LMSDMSRMLYPSEVNNLHMLGSNDIYTRAFGM
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggatcgccacctgcaacatcaactcagtactaccatgagcgatgatggagaccatacc
tgcccgctctgtgccgaggagatggacatcactgaccagcagctcaagccatgcaaatgc
ggatatgatatttgtgtctggtgctggcaccatatcatagacatggctgagaaggaggag
atagagggccgttgccctgcatgtcgcactccctacgacaaggacaggattgtcaaaatg
gctgccacttgtgagaggacggtggcagagaaaaatgcagagaagaagcacaagacccaa
aaggttaagccaaaggcggtggcggcagcagcagcaacaacttctagcatagaagctaag
aagcatctggctggtgtcagggttatccagaggaatctggtgtacatagttggactacct
gcacatttgtgccatgagagtgttcttgagcgtagggaatactttggacaatatgggaaa
gttttgaaggtttcagtttcccgtcctactggacctccttcccagcaggcatcagcaaac
aacaatattaatgtatatattacttatgccaaagaagaggaggccatccgttgtattcaa
gctgtacacaattttgttttggaagggaaagttttaagagcatgctttggtactacgaaa
tattgccatgcatggctgcggaacatgacatgtgggaatccagattgtctctatttgcat
gaagtaggtgttcaggaggatagtttcactaaagatgaggtcatctcagcatatacgagg
actagggtcccccagatggcatccagtgtttcgcaaagacgtgcaggcactgtactgcct
cctccagctgatgatttctcttacagtgcggtggtatcagccaagcatacaatcaagaat
ggaacacttaataccaaccaccagcccagactttcacctccaaatagtagttctgggagg
tccacgcttccaccagcttcctcatgggggcatcgtgatttgaatgccaggacaacagct
aatggggtgacatcaacacagtctcaaacaaaatcaaaatcagagccacaaattaattca
ttttctagttcttcaactattgcaagtacaataataccttcttcctggaatgatgataca
agtacagcgccaaaaatgtctgaaggaaggcaagtgtcagaacaagatagtgcatccaaa
accatagagccatataagcctggtattgtgaaggaatcacattctctatcatcactggac
atagacttctccacaataccttcagcttggaatgatgatgacattgtagtgtcagatgac
atgtcaaaaggaagcgaggaaattcaagctgcgaaagaaaatggaaagctaacccatcta
gcgtccaagtcgccaatatcacctaagaaagacttgacaatgaacattaccagcaaacat
ccttcagattttgcatcagatctagcaatttcgaaatcagatgtaaagactggtgatggt
gatagctcagttgccaagattactcctaaaagccctacttcagctgatgtaaactgccaa
acttgtcttgctgctgatgagaaaatactagaggatattggccccagggagactgacatt
gagaagctttctgttcagatatctttagtaaagttaaatggcaatgatgaggttcatcat
atggcaggaaatcaaaatcatcaaccagatgcaattccatgcacgtctgttattgtgccc
ataggtcagaattttgacagaggccaatctcatatgaagcttgatgagctcctacattca
gaaaataaggatatggttctctctagtcaatatggttctgataaccatcttgattggact
tcaaagcaacaaagttgtagtgctacttcattaaatgatatagaaaattccacagcgatc
actgacaaacttcatagtaggttgatggatggttcagaccaaccatcatattcgtcattt
gccgggttttctaaaacattaggcacttcactgtggaatgatacagaaagtaaccctaca
ttgatgattggtactagaacttcttcccagatgcagtgtgggttttcttcaatcgataag
cctcgtgccttgttaaatggagatcaagatgggcgagggactgtatatgcacctggtaat
gtttctggacatcctggaatgggaagtcatcagcctggtgcaatgggttcagtaagatct
ggtagtgtaggaagttacgacaagaccataagtgtaaataaggatgagagcagaataatt
tctgatatgttttcatcagagtttaatctgtgggatgattcattttcacctgctaacaat
tttgttaggatgcttagagaatctgaaaataatgatgtcccttccaccgtgccttcatgg
aaatcaggatctggcagcagagagtccagattttcgtttgctagacaggataaccaagga
cacttagattcatctctcagaaactgtgctagtgatcaaaattttagtttgctaccccag
atttctcagggaaatttttaccagaatggctgtgcattccaatccctggagaatgatcct
tccaataacaactctcttgctatgtcagatatggcaactactggctcatcaagatccaaa
atatctgcacccccaggattttcagcaccagcaagagtcccgcctcctggattttcttct
ggatttccttcccaggatggtctgaatccccctcctgggttttcctctggaatttcatct
ctggaagtgtctaagaccccactgagattgacttctccattttcttctggattatcatct
caggatgggcctaatcctccttctagaacgttttctgcattttcttctggactttcatta
caggatgggcctaaccacccttctagattcccttctgcatttacctctggattttcatca
cgggatgggtctaatcaggtgtatggctcaatgtacccagaaactcttctccgggataat
gctttaggcggcaacagtaatcattatcaagttccgtttggtaggcacacaaatgacata
gaatttaatgatcctgccatactggccgtggggaaagggcggatgcctggaactggtgat
tcagggctggagatgaaaagtactcatgcttttccagcccacttgcaaacatcaaataat
gatccaaggtttcagttacggatgcaaccgaatgtgcagtctcatcaaaacttgagattc
actgaccatatgcatgatgccttcaatcctatgaacgataattatctggcatccagattt
ttacagcagagccatggtcctgtatccccttatgcgcagatgccacaacaacccagaaac
tcacagcttacaaatggtcacttggatgggtggagtgatttgagacaagggaataacaac
cttatgtcagacatgtcgaggatgctatatccaagtgaagtgaacaacttgcacatgctg
ggttcaaatgatatctataccagagcctttggaatgtga
DBGET
integrated database retrieval system
