Panicum virgatum (switchgrass): 120679374
Help
Entry
120679374 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120679374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120679374
03036 Chromosome and associated proteins [BR:
pvir03036
]
120679374
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120679374
Coactivators
SAGA/TFTC/STAGA complex
120679374
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120679374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Motif
Other DBs
NCBI-GeneID:
120679374
NCBI-ProteinID:
XP_039816884
LinkDB
All DBs
Position
6N:complement(50989062..50997111)
Genome browser
AA seq
775 aa
AA seq
DB search
MSEATEAQLQLTEQEVSVHASQQAGQPHMNATDQFSRSELVTEGSKSEQPVQVEQQNPQL
QQFQPESRLQQAETNSFQLAEKETGSSGQQSFSGSKVDVAQPSVAQQNAKQVVGLQAPSG
AQDTRKGPSIPFNMLIPILQAHLDRDKDMQLQTVWSKLRRNEVHKDDFLRVIRNIVGDQM
LKQAAHKVFQQMQAQAQRNNQANPSQHSLFSQVSAQQMPSSGSAQLHDQKVRPPGPSNQG
QKTQVSSSSQAFAPQSGTQAQTSAQYLSHDNPNQNPDAKVPNAIPNQPPRMNSAVSLQTK
NKQQQPTQFQQASQQIYGASNPGAQGYPRSITGSLRPPNPVPETQPSMHAHGMPPAKVAP
PPTHPMMQHNAVAWQMHQNKELKTNTLPPNANAKQNSESAGKARTVGAGNSSAKGKQGPP
NSSTPNASGGAKSNKKSGGQKKSSEAAGSTQPSSKKQKTSGAFQEQSIDQLNDVTAVSGV
NIREEEEQLLSAPKEESLASQEARRIAQEEEENIFLRKGPLLKKLVEIVRKCNLKNVNVD
VEHCLSMCVEERLRRFISTLIRVSKQRIDTEKTGHRLVITSDVGRQILQMNQKAKEEWDK
KQAEEADRNKKQTEADGSGAAELEKEKEESRPKNVKPNKEEDDKMRTNAANVAARQAVGG
SDVLSKWQLMAEQARQKREGLDVAAASQPGEGPGTRPLSKFGKGFGENQEGSKRSHSAAF
GTGGMKRPGRTPFAGPQRTISVKDVICALEREPQMTKSRLIYRLHERLPGDSTAD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagctacagaagctcagctgcaactaacagagcaggaagtaagtgtccatgca
agtcaacaagcagggcaaccacatatgaacgcaacagatcaattctccagatcagaacta
gtaactgaaggttcaaaaagtgaacaacctgtccaagtagagcaacagaatccacagcta
caacaatttcagccagaaagtcgactgcaacaggctgaaacaaatagcttccagttagct
gagaaagaaacagggagttctggtcagcagagtttttcaggttccaaggtcgatgtagct
cagccctcagtagctcagcagaatgcaaagcaagttgttggcttgcaagcaccatctggt
gcccaggatacaaggaaagggccatctataccatttaatatgttaattcctatcctacag
gcacatcttgacagagacaaagatatgcaacttcaaactgtatggtcaaaacttaggcgc
aacgaagtccacaaagatgatttcttaagagtgatcaggaacattgttggggatcaaatg
ctgaagcaggcagcccataaagtttttcaacagatgcaagcccaggcacaaagaaataac
caggcaaatcctagtcagcattctttattctctcaagtgtcagctcagcagatgccttcc
agtggttcagcacagttacatgatcagaaagttcgtccacctggaccatccaaccagggt
cagaaaactcaggtgtcatcttcatctcaggcttttgcaccacagtcaggcactcaagcg
caaactagcgcacaatatctttctcatgataaccccaaccaaaaccctgacgcaaaggta
ccaaatgctataccgaatcaaccaccaagaatgaactcagcagtttcattgcaaacaaag
aacaaacagcaacaacccacacaatttcagcaggcctcacagcaaatatatggagcaagt
aatcccggtgcccagggttaccctcggtcaatcactggttctcttaggccaccaaatcca
gttccagaaacacagccatccatgcatgctcatggaatgcctcctgcaaaagttgcccct
ccccctactcatccaatgatgcagcacaatgcagttgcatggcaaatgcatcaaaacaag
gagttgaaaaccaatactctccctccaaatgctaatgcaaagcaaaattctgaatctgct
ggcaaggcccgcacggttggtgcaggaaattcttcagctaaaggaaagcagggaccccca
aactcatctacaccaaatgctagtggaggtgcgaagagtaataagaaatcaggtgggcag
aagaaatcatcagaagcagcaggctctacacaaccttcaagcaaaaagcagaagacatct
ggtgccttccaggaacaaagcattgatcaacttaatgatgtcactgctgttagtggtgtt
aatattagggaggaggaggaacagctactctctgccccaaaggaagagagccttgcctca
caagaagcaagaagaattgcacaggaagaagaagaaaatattttcctacggaagggccca
ctcctgaagaaactagtagaaatagttcggaaatgcaatctgaagaatgttaatgttgac
gttgagcattgtttatcaatgtgtgtggaggaacgattgcgaagattcataagtactctt
atacgagtctcaaaacagagaatcgacactgaaaagaccgggcatcgactagttattact
tcagatgttggccgtcaaattttgcaaatgaaccagaaagctaaggaagagtgggataaa
aaacaagcagaagaagctgacaggaacaagaagcaaactgaggctgatggcagtggtgct
gcagagttggaaaaggaaaaagaggaaagtcgcccaaagaatgtgaagcccaacaaggaa
gaagatgacaagatgagaacgaatgcagcaaacgttgctgctcgtcaagcagttggagga
agtgatgtgctctcgaagtggcagctgatggctgaacaagccaggcagaagcgagaaggc
cttgatgtggctgctgcctcgcagccaggtgaaggaccaggtaccaggccattatccaaa
tttggaaaaggcttcggcgaaaaccaggaaggttcaaagaggagccattctgcagcgttc
ggaactggaggcatgaaaagacctggcaggactccatttgcgggaccgcaacggacgatc
tctgtgaaggatgtgatctgtgccctggagagggaacctcagatgacgaaatcgcggctc
atctacaggctgcacgagcggctgcccggagattctaccgcagattag
DBGET
integrated database retrieval system
