Panicum virgatum (switchgrass): 120679409
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Entry
120679409 CDS
T07260
Name
(RefSeq) ABC transporter B family member 19-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120679409
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120679409
04147 Exosome [BR:
pvir04147
]
120679409
04090 CD molecules [BR:
pvir04090
]
120679409
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120679409
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120679409
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120679409
CD molecules [BR:
pvir04090
]
Proteins
120679409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_16
AAA_21
Zeta_toxin
AAA_29
RsgA_GTPase
AAA_25
DUF815
PRK
AAA_28
Rad17
nSTAND1
Motif
Other DBs
NCBI-GeneID:
120679409
NCBI-ProteinID:
XP_039816930
LinkDB
All DBs
Position
6N:5822398..5828733
Genome browser
AA seq
1261 aa
AA seq
DB search
MAMNYYEDHSISSSHADETDERRSTISVSPEASIGEEPFSFFGLLCYADTVDWLLMALGT
IGSIIHGIAFPVGYLLLGKALDAFGTNINDQEGMVHALYKVVPYVWYMAAATLPAGMVEI
SCWIYSSERQLARMRLAFLRSVLNQEVGAFDTDLTTAAIITGVTNHMSVIQDAIGEKLGH
FVASFSTFFAGIIIAFISCWQVAMLSFLVIPLILVIGATYTKKMNGISLSRNAIVSEAIS
VVEQTLSHIKTVFSFVGESWAIKSFVQCMENQFNLSKKEAMIKGIGLGLFQAVTFCSWAL
MVWIGAVAVTENKATGGGTIAAIMSILFGAISITYAAPDLQTFNQAKAAGKEVFKVIKRK
PSISYDKGGAVLEKIHGEIKFRRVHFAYPSRQDKPILQGFSLSIPAGKVIALVGSSGCGK
STVISLLQRFYDPTSGDIFIDGHSIKKLDLKSLRRNIASVSQEPSLFSGNIKDNLRIGKM
DASEEEIIKAATTANVHSFISKLPNGYLTEVGERGVQLSGGQKQRIAIARAMLKDPPILL
LDEATSALDSESEKLVQDALEIAMRGRTVILIAHRMSTIVNADTIVVVENGRVAQTGTHH
ELLEKSTFYSNVCSMQNIEKEAEKKVASTSDNVIEEQIGDAHIRQSSIKQGTKNKLERVE
SKQRKREIGKKIHPFFRLWYGLHKEDILKILFGSSAAAISGISKPLFGYFIMTIGVAYYD
QDAKRKVSKYSLIFFTAGMVTLVSNILQHYIYGIVGEKAMKNLREALFSAVLRNELGWFE
KPKNGVGFLTSHIVSDTSTVKTIISDRMAVIVQCISSILIATIVSMYVNWRMGLVSWAVM
PCHFIGGLIQAKSAKGFYGDSAIAHRELVSLASEAASNIRTVASFVYEDEIIKKAELSLQ
DPLKKTKIESMKYGVIQGISLCLWNIAHAVALWYTTVLVQKKQASFENSIRSYQIFSLTV
PSITELWTLIPMVMSAIAILNPSFDMLDRETEIVPDKPESPGKGWLVGRTEFQDVHFNYP
SRPEATILDGFNLIIEPGQKVALVGPSGAGKSSVLALILRFYDPYRGRVLIDNKNIRDYN
LKWLRKQIGLVQQEPILFNISIRDNISYGSESTSETEIIQAAMEANIHEFISGLPEGYDT
IVGEKGSQLSGGQKQRIAIARTLLKRPPILLLDEATSALDGESERMVMSSLGAKEWTNKD
DRASKVTSITVAHRLSTVINAEMIVVMEKGKVVELGNHETLISADDGIYSRLFHLQSNMK
D
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaactactatgaggatcactccatttcatcatctcatgctgatgaaacggac
gaaagaagaagcacaatttcagtatcgccagaagctagcattggtgaggagccattttca
ttctttgggctgctttgctatgccgataccgtagattggctcctcatggccctgggaacc
atcgggtccatcatccacggcatagcattcccagttggatatctccttcttgggaaggca
ctcgatgcctttggaaccaatataaatgatcaagaaggcatggtccatgccttgtataag
gtggtcccgtatgtgtggtacatggcggcagccactcttcctgctggaatggttgagatc
tcctgctggatatactcaagtgagagacagctagcacgcatgcggctagcatttctgaga
tcagtcctcaaccaagaggtaggggcttttgatactgacttgaccactgcagccatcatc
accggagtaaccaaccacatgagtgtcatacaagatgcaattggagagaagctgggtcat
ttcgttgcaagcttctccaccttctttgccggcatcataattgcatttatcagctgctgg
caagttgcgatgctttccttcctggtcattcctctgatccttgtcattggggcaacatac
acaaaaaagatgaatggcatatcgttgtcacgcaatgctattgtctcagaggcaatatca
gttgtagaacagaccttgtcacatatcaagacagtcttctcctttgtcggagagagctgg
gccatcaagtcatttgttcagtgcatggaaaatcagtttaatctaagcaagaaggaagca
atgataaagggaataggactcggattgttccaagcagtgaccttttgttcctgggcactg
atggtttggattggggcagttgctgtaactgaaaataaggcaacaggaggcggcacgata
gctgccataatgagcatcctctttggtgcaatatcgattacctatgctgcaccagacctt
cagaccttcaatcaggcaaaagctgcaggaaaagaggtcttcaaggtgataaagagaaag
ccatccataagttatgacaaaggtggagcggtactagaaaagattcacggagagatcaaa
ttccgtagggtgcacttcgcgtacccttcccgtcaggataagccaattctccaagggttc
tcgttgtccatccctgcaggaaaagtcatcgctctggtaggaagcagtggatgtgggaag
agcactgttatttcactacttcaaaggttctatgatccaacctcaggtgacatattcatt
gacggccacagtatcaagaaacttgatctgaaatcgctgcgaagaaatatagcttcagtc
tctcaggaaccatcactattttctggtaatataaaggacaacttgaggattggtaaaatg
gatgcaagtgaagaagagataattaaagcagcaacaacagccaatgttcattcattcata
tccaaactaccaaatgggtatttaacagaggtaggagaaaggggtgtgcagttatcaggg
ggtcagaaacaaaggatagcgattgcaagggcaatgctgaaagatccaccaatcctactt
ctcgatgaagcaacaagtgcccttgattcagaatcagaaaagctagttcaagatgcactt
gagatagccatgcgcggaaggactgttatcttgatagcccacaggatgtccacaattgta
aatgctgacactattgttgtcgtggagaatggaagagttgcacaaactggaacacatcat
gagttgctcgagaaaagcacattctactccaatgtatgcagcatgcaaaatatagagaag
gaagctgaaaagaaagtggcaagcacctctgataatgtaatagaggaacaaattggtgat
gcacacatcaggcaatcttctataaagcagggaaccaagaacaaactagaaagagtggag
tcaaagcagcggaagagagagattggaaagaaaatacaccctttcttcagactttggtat
ggactgcataaagaggacattttgaagattctatttggttcctcagcagcagccatctct
ggaatctcaaagcccttatttggttacttcatcatgacaattggtgtggcatattacgat
caagatgcaaaaagaaaagtcagcaagtattctttgatattcttcacagctgggatggtc
acactggtcagtaacatcttgcagcactatatttatggtattgttggagaaaaggcaatg
aaaaacctaagggaggccctcttctcagctgttcttcggaacgagcttggttggtttgag
aaaccgaagaatggtgtaggatttctgacctcgcacattgtcagtgacacctcaacagtc
aagaccatcatatcagacagaatggcggtcattgtacaatgcatctcttcaattctgata
gcaacaatagtaagcatgtacgtcaattggcgcatgggtttagtttcatgggcagtcatg
ccatgccatttcattggtggccttattcaagccaagtcagccaaaggattctacggtgac
tctgctatcgctcaccgggaacttgtctcccttgcttcagaagcggctagcaacatccga
actgtggcatcctttgtttatgaagatgaaataattaagaaagcagaattgtcactgcag
gatcctttgaaaaaaaccaagattgaaagcatgaagtatggtgtgatccaagggatctca
ctctgcctctggaatattgcacatgcagtggcgctttggtacaccacagttctggtccag
aagaagcaagcctcatttgagaacagcataagatcataccagatattctcactcacagta
ccttcaatcacagaattatggaccctcattcccatggtcatgtcagcaattgcaatactg
aatccttcatttgacatgcttgacagagagactgaaattgtaccagataaaccagagagt
cctggcaaaggttggctcgtcgggagaaccgagtttcaggatgtgcacttcaactatcca
tcaaggccagaggcgaccattctggatggcttcaatctaattattgaacctggtcaaaaa
gtagcattggttggcccaagtggtgctggaaaatcctctgtactggctctaatactgaga
ttctatgatccttacagaggcagagtgttaatcgacaacaagaacataagggactacaat
ctcaaatggctcaggaagcagattgggctagttcaacaagaaccaatcctgttcaacata
tctatcagagataacattagctatggaagtgaaagcacttcagagactgaaataatccaa
gctgcaatggaggcaaacattcatgagttcatcagtggtttgccagaagggtatgacacc
attgttggagagaaaggaagccagctttcaggagggcagaaacagcggattgctatagca
agaacactattaaagaggcctcctattctgcttcttgatgaggcaactagcgctctcgat
ggtgaatctgagaggatggtaatgagctctttaggggctaaggagtggacgaacaaagat
gatcgagccagtaaggttacaagtataacagttgcacatagattgtcaacggtcataaat
gcggagatgatagttgtaatggagaaaggaaaggtggttgaacttggtaatcacgaaacg
ttgatatctgcagatgacggcatttactcaaggttattccacttgcaaagcaacatgaag
gattaa
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integrated database retrieval system
