Panicum virgatum (switchgrass): 120679516
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Entry
120679516 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 2-like
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120679516
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120679516
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120679516
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120679516
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120679516
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120679516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
120679516
NCBI-ProteinID:
XP_039817061
LinkDB
All DBs
Position
6N:complement(49307233..49311905)
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AA seq
890 aa
AA seq
DB search
MGDTRPRAWEAGESSRDAKTPRLDLLASAALEQNDLSRWDEWPEVTGDKDWCDHVPTDSA
HKEILDSSLLSDDAGKCADCQREDAEEEPGKCRPVHSRILVCLECGRQSCGDSDSYLPYG
HAQDHAKHEQHWVAAMFADPQAGFCFKCETEVSVYPEQEEMPGEIQAGGHGFGSDVHYGP
GNGSLDIGFTWQCHEFGSSNVQGYAIRGIPNRGSTCYVNAIVQCLLVLDKLRARMLGPDA
PPGQLGLALMELFVETCVEDAVAGMLNPDKLLRRVRLHTDKFEAYRMHDSHELLDSLRSA
LHSEENEIEIPNRQRVAATVIDSIFRGEISYTRSCIRCGSSLVLHDQFCELSLPLPSKEH
PSRSAAAPKTSESLKSQPKKAATQLIPTNEKSTSEKIQEVVKSGDSHILGSELKDVVEKT
PEPLEVDSSEAQCIWQSKDVLQDPLETMEDKASCSELSRGIIEAPPKSVSFVLQNLSNVK
VEQVIEMTADSHSPEDMVPPPLVAPLSENGAPMALGSSVDQNDNVNPGDLLNQLEVSIQA
KENTCTGQLTAEDKENARSRDAVYDKVVGVSNIVPSIEDCLSLFFKEQVVERNCDDCPKV
IEEPSTNQSENGGQMVSSTTDNTAVDGNLTEQSGRLTCHIKQSIEPNSLSVECKSSSSRQ
PDDSDAKSEIIQTEEVNTERINSGMSYGDKEIECHDGIQEAVSSCLPAEKQTDLLSSEHS
QNLSTPNQDRSKQVGLDLSAIQLEDNQNEQKERSGCAIETPCITKLPSVLTLHLKRYINC
GNAHHKNEAHVSYKEYLDVEQFMDPSSVDKDKSLYQLAGVVEHRGPSMNAGHYVAYVRAR
RLGNQEQQSSCSASWFCADDGHIREVTLEEVLKRESYILFYEKMEDQRKI
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacgaggccgagggcgtgggaggcgggcgagagctcgcgggatgccaagact
ccgcggctggacttgctggcttcggctgcgttggagcagaacgatctgtcgcgctgggac
gaatggccggaggtgacaggcgacaaggattggtgcgatcacgtccccactgacagtgcc
cacaaggagattctggattcgtcgctgctatccgatgacgcagggaagtgtgcggattgc
cagcgcgaggacgccgaggaggagcctgggaaatgccggcccgtgcatagccgtatcttg
gtgtgcctggaatgcggccggcaatcctgcggggattccgatagttatctcccatatggt
catgctcaggaccacgccaagcatgagcagcattgggttgctgcgatgttcgctgatcca
caagctggattctgcttcaagtgtgaaactgaagtgtctgtgtatccagagcaggaagaa
atgccaggcgaaattcaggcaggtggtcatgggtttggatctgatgtgcactacggtcct
ggcaatgggtcactggatatcgggttcacatggcaatgccatgagttcggatcatctaat
gtgcaaggctatgctatcagagggataccgaatcgcgggagcacatgctacgtgaatgca
attgtgcagtgcctccttgtgcttgataaactgcgggcaaggatgttaggaccagatgct
ccaccaggtcaacttggcctagcactaatggagctttttgtggagacatgtgtggaagat
gctgtggcaggcatgctgaacccagataaactcttgagaagggtacgcttgcatactgac
aagttcgaagcctatagaatgcacgacagccatgaactgcttgactccttgcgcagtgct
ttgcatagcgaggaaaatgaaattgagattcctaacaggcaaagagttgctgctacagta
attgattccattttcaggggtgaaatctcttatacacggtcctgcattcgttgcggatct
agtctggttttacacgatcagttctgtgagctctcactgccactgccatcaaaggagcat
ccatccagaagtgctgcagcaccaaaaacaagcgagtctctcaaatctcaaccaaagaaa
gctgctactcaactaattccaacaaatgagaagagtacctcggaaaagatccaagaagtt
gtcaaaagcggtgattctcatattcttggttcagaattgaaagatgtcgtcgagaaaaca
cctgagcctttggaagttgattcttctgaagcacaatgtatctggcaaagcaaggatgtt
ctacaggatcctttggagactatggaggataaagcctcatgttccgaactttcacgaggg
atcattgaagcgccaccaaagtctgttagttttgttctccagaacttgtctaatgtcaaa
gttgagcaagtgattgagatgacagcagattcccacagtccagaagatatggttccacct
ccacttgttgctccactaagtgaaaacggtgcaccaatggcattaggcagttctgtagat
caaaatgacaatgttaatcctggtgatctattgaatcagctggaagttagtatacaagcc
aaggagaacacttgcacaggacaattaactgcagaagacaaagaaaatgctcggagtaga
gatgctgtatatgataaggtggtaggggttagcaatattgtaccatcaattgaggactgt
ctatcactgttttttaaagaacaggtggtagaacggaattgtgatgattgtcccaaggtt
attgaggagccaagtaccaatcaaagtgaaaatggtgggcagatggtgtcaagtaccact
gataacacagcagttgatggaaatctgactgaacagtcaggcaggttaacatgccacatt
aagcaatctattgagccaaacagtttgtcagtggaatgcaaatcttcttcaagtaggcaa
ccagatgattctgatgcaaagagtgaaattatacaaacagaagaagttaatacagaaaga
ataaattctgggatgagttatggcgataaagaaattgaatgtcatgatggtattcaagaa
gctgtaagtagttgccttccagctgagaaacagaccgatctgttgagctctgagcatagt
caaaatcttagcacgccaaatcaggacaggagtaagcaagtcgggctggatcttagtgca
atccagttagaagacaaccaaaacgaacagaaagagaggagtggatgtgctattgaaaca
ccttgtattaccaagctgccatctgtattaactcttcatcttaagaggtacatcaattgt
ggcaatgcccatcataaaaatgaagcacatgtgagctataaggagtaccttgatgtagag
caattcatggaccccagctccgtggacaaagataaatctttgtatcagctagctggtgta
gtggagcaccgtggaccctccatgaatgccggacactatgttgcttacgtgagagcaagg
aggcttgggaatcaggaacagcagagcagctgctctgcctcatggttttgtgcggacgat
ggtcacatcagagaagtcactctagaagaagttctcaagcgtgagtcatacattcttttc
tatgagaagatggaagaccagcgtaagatctga
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