Panicum virgatum (switchgrass): 120679603
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Entry
120679603 CDS
T07260
Name
(RefSeq) peroxisome biogenesis protein 1-like isoform X1
KO
K13338
peroxin-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120679603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120679603
Membrane trafficking [BR:
pvir04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
120679603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-1N
AAA_16
AAA_lid_3
ATPase_2
AAA_14
AAA_5
AAA_22
ORC-CDC6-like
DUF815
RuvB_N
RNA_helicase
nSTAND3
AAA_2
TsaE
AAA_19
AAA_7
AAA_28
IstB_IS21
AAA_33
Mg_chelatase
bpMoxR
AAA_11
Rad17
Motif
Other DBs
NCBI-GeneID:
120679603
NCBI-ProteinID:
XP_039817157
LinkDB
All DBs
Position
6N:52149595..52161374
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AA seq
1098 aa
AA seq
DB search
MSGGGMEVEVRVVGGARSCFVALPLHLIHALERTSASGDLPPVLALQLRGPAGGRWSLAW
SGAASRSGAIEVAQELADCISLPDGTIAQLSVARSLAKADSVIIEPYGEDDWEILESRAE
LAEETILKQVGIVYEGMKFPLWLDGHNIVKFVVVSSCPEKSVVQLVPGTEVAVAPKKRKE
PSQDVKKQSTLEEQVKTKALLRVQPADRKHIHTFKYKGVDIGVVLSYAVLIHPDTATSIS
VCNLQMVTVSPKSSKKGLAHNGKEVAQKKGISVAKERTHEAVVYILLSDSVAKGHVMLPY
SIRHFISADVHSWVYIKTYSANITKDEPVATLSSLRFVMHVKDAHGNSELVTQEADTSKI
TRIPPENDDFFQEAHYGESKSLQAADIESISESVSKQKFFIKHWLIGQLKEMGLHASHTE
IGSIVLPSNVVLHFEVAYEKPNRGVELLYLLTFTSENSSFDNTQLKVETAWSAPIGNPEN
VELHFRKLELGEPVSFGSIMDSSAADGFKLTRSSLGWMENAMSDVIKRLSVLLSSSSLRL
FNRLKFPFPGHVLVYGPRGSGKTALTRASAKYFEDHKEILAHVIYRDCSKLALGKTKEMR
QAIEDSISEALLHSPSIIIFDDLDSVISVSSDPQVSQSSSSSDSPVRYLADIMDEFKDKT
RSTCGYGPIAFMASVQSLQSLPQDLTSSGRFDFHIELHALTVPQRKALLKHQVEEHELQC
SEEVLSDIASKCEGYDAYDLEILIDRAVHAAASRFVLPSNASLNSVKPTLVMEDFSKAMH
GFLPVAMRELRKYAPDDKDGGWEDVGGLNEAVTIIKETLELPSKYPNIFTRAPVRLRSNI
LLYGPPGCGKTHIVRAAAAACSLRFISVKGPELLNKYIGSSEQSVRDFFAKAAAAAPCLL
FFDEFDSIAPQRGTHSAGVSDRVVNQFLTELDGVETLTGVFVFAATRLAPCNKPQLIDAA
LLRPGRFDRLVFCDFPRWDERLEILKVHSKTVSLANDTSLEDVAFLTEGFTGADLAAILT
DAGLAAVHELLDNQGNGVPESEPCISKELLMSVARKARPSTPADEKRRYDKEFGEFVSSR
KSISTKARESKGKKVTLA
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcgggatggaggtggaggtccgcgtggtgggcggcgcgcggagctgcttc
gtcgcgctcccgctccacctcatccacgccctggagcgcacctccgcgtccggcgacctc
ccgcccgtcctcgcgctccaactccgcggccccgccggtggccgctggtccctcgcctgg
tccggcgccgcgtctcgatccggcgccatcgaggttgcccaagaattggcagactgcatt
tcactgcctgatggaactatagcacagctgagtgtagctcgctctctggccaaagctgac
tcagtcattatagaaccatacggtgaggatgactgggagatactagagagccgtgctgag
ttggctgaagaaacaatcttgaaacaggtcggcatcgtttatgagggtatgaaattcccc
ttgtggttggatggccataatattgtgaagtttgttgtggtgtcatcttgcccagagaag
tcagtggttcaacttgtgccaggaactgaagttgctgttgcacccaaaaaacgcaaagag
ccttctcaggatgtgaaaaagcaaagtacactggaggaacaagttaaaacaaaggcactt
cttcgtgttcaaccggctgataggaagcatatacatacgttcaaatataaaggtgttgac
ataggggtggttctcagctatgctgtgctaatacaccctgatacagctacaagcatttcg
gtttgcaatctccaaatggtcactgtttcacctaagtcatcaaagaaaggactcgctcat
aatggcaaagaagttgcacaaaagaagggaatttcagtagctaaagaaagaacccacgaa
gctgtggtttatatcttactctcagactctgttgccaaagggcatgttatgctcccctac
tctattcgacatttcataagtgctgatgtacactcatgggtatatattaagacatactca
gctaatatcacgaaggatgagcctgtagcaacattatcttctttaaggttcgtgatgcat
gtgaaagatgcccatggtaacagtgaattagtcactcaggaagcagacacttcaaagata
accagaattcctcctgaaaatgatgatttcttccaggaagctcattatggtgaaagcaaa
agtctccaggctgcagatatagagagcatatctgagtctgtgtcaaagcagaagtttttt
attaaacattggcttattggacaacttaaggaaatgggtttacatgctagccatactgag
ataggttcaatagttttaccatccaatgttgtgctccattttgaggtggcatatgaaaaa
ccaaacagaggagttgaattactatacctgctcacatttacttctgaaaactctagtttt
gacaatacacaactcaaggttgagactgcttggagcgctccaatcggcaatccagaaaat
gtggaactgcatttcaggaagttggagttgggagagcctgtatcttttggttccataatg
gatagtagtgccgctgatggtttcaagttgacacgatcttctttaggctggatggagaat
gcaatgtcagatgtgataaaaagattatctgtgctcctatcatcaagtagcctgaggtta
tttaacagactaaagttcccctttcctggacatgttcttgtctatgggcctcgaggttct
gggaaaactgctttgaccagggcatctgcaaaatactttgaagatcataaagagatcttg
gcgcacgtaatatacagagattgttccaaacttgccctgggcaagactaaggagatgagg
caagcaattgaggacagcatttctgaagcgctgcttcattcaccttcgatcatcatattt
gatgatctggacagtgtaatttcggtctcttcagatcctcaagtttctcaatcatccagt
tcttctgattctccagtaaggtatttggctgacattatggatgagttcaaggataagact
cgaagtacatgtggatatgggcctattgcatttatggcttcagttcaatcacttcagagt
cttcctcaagacttaacctcctctggcagatttgatttccacattgagcttcatgctctt
acagtccctcagcgcaaagcacttctcaaacatcaagttgaggagcatgagttgcagtgt
tctgaggaagttctgtctgacatagcatcaaaatgtgaaggttatgatgcatatgacttg
gaaattttgattgatagggctgtgcacgctgctgcttctcggtttgttctgccttctaat
gcctccctgaactctgtgaaaccaactttggtgatggaagatttctcaaaggcaatgcac
ggcttccttcctgtcgcaatgcgtgaacttagaaagtatgctcctgatgataaagatggt
ggctgggaagatgttggagggctaaatgaagcagtaactattattaaagagactcttgaa
ttgccatccaaatacccaaatatatttaccagggcacctgtacggttgcgatcaaacatt
ctcctgtatggaccacctggatgtggcaaaactcacattgtgagagctgcagccgcagct
tgttctttgcgattcatttcagtcaagggcccagagctattgaataagtacatcggttca
tctgagcaatctgttcgtgacttttttgcaaaggcagctgcagcagcaccttgcctgcta
ttctttgatgaatttgactccattgcaccccagcgaggaactcatagtgctggagtttct
gaccgtgttgttaatcagttcttgacggaactagatggtgtggaaactttgactggggta
tttgtatttgcagctacgaggttagctccgtgcaacaagccacaactaattgatgctgcg
ctcttgcggcctggaaggtttgatcgtctagtcttttgtgattttcctcgatgggatgaa
cgtttggaaattttgaaggtgcattctaagacggtttcactggcaaatgataccagtctg
gaagatgttgcttttctgaccgaaggatttactggtgctgatctcgccgctattctaaca
gatgctgggttggcagcagttcatgaacttttggacaaccagggtaacggggtcccggaa
agcgaaccgtgcatcagcaaagaacttctcatgtctgttgctaggaaggctagaccttct
acacctgcagatgagaagcggcggtatgataaggagtttggtgaatttgtatcatccagg
aagtctatttccacaaaggcaagagagtcgaaaggcaaaaaggtcacactagcttga
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