Panicum virgatum (switchgrass): 120679753
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Entry
120679753 CDS
T07260
Name
(RefSeq) splicing factor-like protein 1 isoform X1
KO
K13095
splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120679753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120679753
Spliceosome [BR:
pvir03041
]
Complex A
Other components
Complex A specific factors
120679753
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
KH_1
Motif
Other DBs
NCBI-GeneID:
120679753
NCBI-ProteinID:
XP_039817341
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Position
6N:complement(366162..371070)
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AA seq
760 aa
AA seq
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MATKLDQPSPAEHRRPKSAAPQSLTPKISIFGTKAGFVIPKNKLAGSIVTRGATSKNDTA
TASKEDNSRHAQRKTKWGPDLAADPAVCKGRALAYQTRVEQITKQLKSETLDMDETEGSM
STGKGSNSAGTANLKDNKQGKVALLELERSEIIGEILRLNPGYKVPENYKPVLKEAKIPL
PAEAHPGHGIIGVLIGPESNTQKRLHEETGAVIQVYGTKKINGEMSEILYQDINEAQAAY
EDLHINVSADSYDKIDAAVALIELLLAPVSVKSTATSTTTTVSSAVTSDDVNPVQNTTSQ
QGLLHYQSNNAPWLSTPQTYGPPVPSSGPVLSTLPNNSLQPQPLAGSFSIPPYTGQPPHT
NSMPKNPFPVPGPQQPISSVPQHPPQSQANSSFGPFGQPPGIVNPQMTPSSSVPPPVRPL
QIPHASGGWPSFSPITSQSQWPQASPTFMPVRPISVSPLGATPPQGPAALTPPSNIPTMY
RSQQPAVSNFTCSAPLVSRPPAGAQSFSTLAPHGPASVAFPGGTSTQSAYPLSMQVVSTP
GQMRGPPPAFSQVGPTPGIVPPLVASPCPPASGPASTSCSRAPIGALRPHPVAGDFTFRP
VVSPAPTRDFAASGSQMGIQGRSHPGALFFHPGNQSLNQSFPRPCDGRTVNIMGQTRMHA
PPPHLHGAFPRNPSPLELPGGFLGTPPAVQAPQMPAPSNPSSFLPPRPFQPRPSLQLNPF
ASRSRQGGNPIYDPFAPTAVQKTEASDPEYEDLMASVGVK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaactcgatcaaccttctccagccgagcatcggcgaccaaaatccgctgca
ccacaatctttgactcccaagatctcgatattcgggacaaaagctggattcgtcataccc
aagaacaagctagccggctcaatcgtaaccaggggcgccacttccaagaatgatacagca
actgcatccaaggaagataacagcaggcatgctcagagaaagacaaagtgggggcctgac
ctcgccgccgaccctgccgtgtgcaaaggaagggctttggcctaccagactcgagtggag
caaattaccaagcagctgaaatccgaaactttggatatggacgaaactgaaggttcaatg
tccactggaaaagggtcaaattctgctggcactgcaaatctgaaagacaataagcaggga
aaggttgcgctattggaacttgaaagaagcgaaattattggtgaaatactccgtctgaat
ccaggatataaggtgcctgaaaactacaaaccagtacttaaggaggcaaaaatccctctt
ccggccgaagcacatccaggacatggtattattggagttcttataggacctgagagcaat
acccagaagcgactacatgaagaaactggagctgtaatacaagtttatgggactaagaaa
atcaacggagagatgagtgagattctttatcaagacataaatgaagctcaagctgcttat
gaagacctacacatcaatgtctcagctgactcttatgataaaatagatgctgcagttgca
ttgattgagctgcttctggctcctgtttctgtgaagtcaaccgctacttcaacaactact
actgtttcttcagccgttacctccgatgatgtaaatccagtgcagaatacaacttcacag
caaggtttgcttcattaccaatcgaataatgctccttggctgtccactccccagacctat
ggtccaccagttccttcctcagggcctgttttgagtacattacctaacaattcattgcaa
ccacaaccgctcgctggttctttcagtattcctccatatacaggccaacctcctcacacg
aatagcatgccaaaaaatccatttcctgttcctggacctcagcaaccaatatcaagcgtt
ccacaacatccacctcagtcccaagccaactcctcatttgggccttttggtcaaccacct
ggaattgtaaacccacaaatgacaccatcttcctcagtgccaccaccagttaggcccctt
caaataccccatgcatctggtggatggccatctttttctcccattacatcgcaatctcag
tggcctcaagcttcaccaacttttatgccagtgagacctatttccgtgtctcctcttggt
gcaactccaccacagggtcccgctgcactgacacctccatcaaatatccccaccatgtac
cgcagccagcagccagcagtatcaaatttcacttgttcagcaccattggtttccaggcct
cctgctggagctcagtccttttctacactcgcgcctcatggtcctgcctcggtagcattt
cctggtgggacatcaacacagtcagcttacccactttccatgcaagtagtttcgacacct
ggtcaaatgagaggcccacctccagctttctctcaagttggaccaactcctggcattgtg
cctccattggttgcatctccctgcccgccggcctcaggtcctgcgagcacaagctgcagt
cgggcaccaattggagcattgagaccacaccctgtggctggtgattttacctttcggcct
gttgtgtcacctgcacctactcgagacttcgcagcatcaggaagtcagatgggaatacaa
ggcagaagtcaccctggcgcactattcttccatcctggcaatcagagcctcaatcaaagc
ttcccaaggccttgtgatgggaggacagtgaatattatgggtcagactcggatgcatgct
ccacctccacacttgcatggagccttccccaggaacccatctcctcttgagttacctggg
ggtttcctggggacccctccagcagtacaagcacctcagatgccggcgccgtcaaatcca
tcgagtttcttgcctccccgcccatttcagccaaggccatcattgcaactgaatccattt
gcgagcagaagcaggcagggtggcaatccaatctacgatccttttgcaccaacggcagtt
cagaaaacagaggcgtcggaccctgagtacgaggatctcatggcatctgttggcgtgaag
tag
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