Panicum virgatum (switchgrass): 120679801
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Entry
120679801 CDS
T07260
Name
(RefSeq) single-strand DNA endonuclease 1-like isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120679801
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120679801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo
Motif
Other DBs
NCBI-GeneID:
120679801
NCBI-ProteinID:
XP_039817391
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All DBs
Position
6N:complement(445633..449760)
Genome browser
AA seq
706 aa
AA seq
DB search
MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQLCSAHRSPAFLKDKVYLKNLFHR
IRALLALNCSLVFVTDGAIPSVKLATYRRRLGVNAAEAAREEDNSQPLTSLRRNKSSEFS
RMIKEAKHLGMALGIPCLDGVEEAEAQCALLNFSSLCDGCFTSDSDSFLFGARTIYRDVF
IGEGGYVICYEMEDIEKKLGFGRNSLISLAVLLGSDYSNGVLGFGPEAACRLVKSVGDDA
ILDQILSNGVKPTRKSKAKNSGVNVERVGGTCPKASTCKLGMSQDSGGQFRDIINAYLEP
KCHSPDSEAVQRACSQRPYLRSQLQQICEQYFEWSPEKTDEYILPKIAERELRRFSNLRS
TSSDLGIKPSLNEIPVPCPVLAIVKQRKVHGNEYYEVSWRNIDGLQVSVVPGDLVRSACP
EKIAEFLEKKDEQKKQKRRARPKISAPAAIKEVDAQLQELLLEIESESGTLPCTTAGPQK
ADIHTVAPLQDIVDLSSPSPPIRACKIARSRKFSESAAGPMDGIDLQSQSLLPGTMELQE
NALLCDMQNSTQDNDVIDLFSPVPRAAHKPHATQGLQLCMEEGRRVLSDISNFPEKGNTL
GALGYKLEGGARGNDVHPEEASSSISHGIEVAGKADCSWRSDAEDNVVAEAATIDLSSPL
PVIGNKSKKNVDVIDICEADSDRSSEHERKARELRSFLASIRNELY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcaagaacctctgggacatcctcgactcctgcaagaagaagctcccgctccag
cacctccagaacaagaaggtgtgcgtggatctttcctgctggctcgtgcagctctgcagc
gcccaccgctccccggccttcctcaaggataaggtctacctcaagaacctcttccaccgc
atccgagccctcctcgccctcaattgcagcctcgtcttcgtcacagatggggctattcct
tctgtcaaattggcaacttacaggcgccgcctcggagtaaatgctgctgaggctgctcga
gaggaggacaactcacaacccctgacttctttgcgccggaacaagagctctgaattctcg
cgcatgataaaagaggccaagcatcttgggatggccctgggaattccctgcttggatggg
gtggaagaagcagaagcacagtgcgcattgctcaatttttcctccttgtgcgatggctgt
tttacatcagattcagattcattccttttcggtgcaaggacaatttatagagatgttttc
ataggagagggtggctatgtaatttgctatgagatggaagacattgagaaaaagcttggt
tttggcaggaactcactgatatctcttgcagtacttcttggcagtgactattctaatgga
gttctaggcttcggcccagaagcagcatgccggcttgttaaatctgtaggggatgatgct
attcttgatcagattttgtccaatggagttaagcctacaagaaaatctaaagcaaaaaat
agtggcgttaatgttgagagggttggtggcacatgcccaaaagcaagtacctgcaagctt
gggatgagccaagattctggtggtcaatttcgtgatataataaatgcatatctggagcca
aaatgtcattcacctgattcagaagctgtgcagagggcatgcagccagcgtccatatctt
cggtcacaactacaacagatatgtgagcagtactttgaatggagccctgagaagactgat
gaatatatccttccaaagatagctgagagggaactcaggagattttcaaatcttcgctcc
acgtcttcagatctaggaattaagccttcactaaatgagattccagtaccatgccctgta
ttggcaattgtgaagcagcgaaaagttcatggtaatgaatattatgaggtttcatggaga
aacatagatgggctccaagtttcagttgttccaggggatcttgttagaagtgcttgccca
gaaaaaatagctgaatttttggaaaagaaggatgagcagaagaagcaaaagaggagagct
aggccaaagatatcagctccagctgccattaaagaggtggatgcgcagctccaagagttg
ttgcttgaaattgaatctgaaagtggtacccttccatgtacaacggctggccctcaaaaa
gcagatatacacactgtggcaccgctccaggatattgttgacctgtcttctccatccccg
cctatacgagcttgtaagattgcaaggtccagaaagtttagtgaatcagctgcaggaccc
atggatgggattgatctgcagagccaaagtctgctacctggaacaatggagttacaagaa
aatgcccttttgtgtgacatgcagaattcaacacaggataatgacgtgattgatttattt
tcacccgtgcctcgtgctgctcataaaccccacgccactcaaggcttgcaactctgtatg
gaagaaggaagaagagtcctctcagatataagcaattttcctgagaaagggaacacgctg
ggcgctctaggttacaagcttgaaggtggagcgagaggcaacgacgtgcatccggaagaa
gcatcatcctcaatcagccatggcatcgaagtggcaggcaaagctgattgttcctggaga
agcgacgcggaggacaatgtagtagcagaagctgcgaccatcgatctgtcctcccctttg
ccagttatagggaataaaagcaagaaaaatgtagatgtaatagacatttgtgaagcagat
agtgataggtcttctgaacacgagaggaaagccagagagctcaggtcgtttctagccagt
ataagaaacgagttgtattga
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