Panicum virgatum (switchgrass): 120679874
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Entry
120679874 CDS
T07260
Name
(RefSeq) meiotic recombination protein SPO11-2 isoform X1
KO
K10878
meiotic recombination protein SPO11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120679874
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
120679874
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TOP6A-Spo11_Toprim
TP6A_N
Motif
Other DBs
NCBI-GeneID:
120679874
NCBI-ProteinID:
XP_039817470
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Position
6N:complement(6368192..6371378)
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AA seq
382 aa
AA seq
DB search
MADVAAASLFGADRRLCSADILAPAEVRARIEVAVLNFLSALASPTSPAISVLPLISRTS
ANCSLRSSLLSDVSSVYLSYAFCKRSLMRENNAKAFVRVWKVMEMCYKILGEGKLVHQRE
LFYKLLSDSPKYFSCQRHVNRAIQDVVSLLRCTRQSLGVMASSRGALIGRLVLHEPDEEQ
IDCSILGASGHAITGDLNVLSKLNLSSDARYIIVMEKDAIFQRLAEDRLYNQLPCILITA
KGYPDIATRFILHRLSQTFPNMPIFALVDWNPAGLAILCTYKYGSISMGLESYRYACNVK
WLGLRGDDLQLIPESAFQELKPRDSQIAKSLLSSKFLQESHRAELTLMVESGKRAEIEAL
YSHGFDFLGKYIARKIVQGDYI
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtggcggcggcgtcgctcttcggcgctgaccgccgcctctgctccgctgac
atcctcgcacccgctgaggtccgggcaaggatcgaggtggcggtgctcaacttcctctcc
gcgctcgcctcccccacctcgccggcaatctccgtcctccccctgattagccggacctct
gccaactgcagcctacgcagcagcttgctgagtgacgtttcgtcagtttatctctcgtac
gccttctgcaagaggtctctgatgagagaaaacaacgcaaaggcgttcgtaagagtatgg
aaggtcatggagatgtgctacaagatcttgggggaggggaagctggtccaccaacgggag
ttgttctacaagctcctctcggactcgcccaagtacttcagttgtcagcgccacgtcaac
cgagccatccaagatgtagtttccttgctgcggtgtacaaggcagagcctaggagtcatg
gcatcaagcagaggggcactgattgggcgcctcgtgttgcatgaaccagatgaagaacag
attgactgttccattcttggagcttcagggcatgcaattactggagacctcaacgtattg
agcaaattaaatttgtcttcagatgctcggtatatcattgttatggagaaggatgccata
ttccagaggctagctgaagaccgcttgtataatcagcttccttgcatcctgatcactgca
aaaggatatcctgatattgccacaaggtttatcttgcatcgattgagtcagacttttccc
aatatgccgattttcgcattagtggactggaacccagcagggcttgctatactgtgcact
tacaaatatggaagcatatcaatgggtttggagtcatacagatatgcttgcaatgtgaaa
tggcttgggctaagaggggatgatctgcagcttatccctgagagtgcattccaagagctg
aagccacgtgattcgcagattgccaaaagcttgctgtcatcaaagttcctacaggagagt
cacagagctgagctgacgctgatggtggagagtggcaagcgtgcggagatcgaagccctc
tactcccacgggttcgatttcttggggaagtacatcgcgagaaagattgtacagggcgac
tacatctga
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