Panicum virgatum (switchgrass): 120680047
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Entry
120680047 CDS
T07260
Name
(RefSeq) general transcription factor 3C polypeptide 3-like isoform X1
KO
K15201
general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120680047
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
120680047
TFIIIC, fungi type
120680047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_8
TPR_1
TPR_14
TPR_16
ANAPC3
TPR_2
TPR_7
TPR_CcmH_CycH
TPR_9
TPR_17
TPR_12
TPR_6
ARM_TT21_5th
TPR_11
TPR_15
DUF6584
ARM_TT21_C
TPR_Slam
HEAT_Nup120
ARM_TT21_2nd
ARM_TT21_4th
SNAP
TPR-S
TPR_EMC2
NatA_aux_su
Alkyl_sulf_dimr
InlK_D3
Motif
Other DBs
NCBI-GeneID:
120680047
NCBI-ProteinID:
XP_039817628
LinkDB
All DBs
Position
6N:complement(11784933..11805750)
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AA seq
901 aa
AA seq
DB search
MSAATAEAGDPRLDGNEDFEEDDEDGFEFGDAEEAMQCVEMAGRSTAAGALRAQGHDYEA
LAARKRKALAEDQPQREGSKRPRQDELTEAEAATMFDQLMEGFGLRRKRRSKEGKKRGRK
KGTKNKGSPEVIKKLGDATLLFAEEKFNKAIPILHEIVRIAPNLPDSYYLLGSIYNKTGE
LDKAINFLMLAAYVSPKDASLWKKLIPLAKKKEDASLARHCILKAMRADPEDVDLKYLCG
DMYRNLRDYQKAAEIYEQIVRIYPANIAVRKVAAQMYRESGQIDKAINLLEDYVNTQTTN
SDWTVLDLLISLYLRNNAINEALKQIEKARLQLRSQQKLPVQLQAKEVICHAYLGDMKHA
EIFLNDVHLEPSKDSTDVTKELASNLETMGLYEYAVKFYLMIGNVANHNDGSSYIDHKEL
GSSYVKVAQCYMVLGDKRNAIPYFYKALQSIKDNIDIRLTLSSLLIDEDKTDEAITLLSP
PKNPELQSANTPEQHKPWWCDGRVKMQLAKIYYNKGKLEDFVDTIFHPILETLNVEYVNR
KVKPMRKLTNTVLHERVKVLGEPRPDSIFQGLRPIASPGELQKANRAKKLMEKRAASNEE
LKSDDSQRTKQVPPLPGLLTNMEHHQLVLNLCRTLALLQRYWDALQIINRTLKLGNDLLT
DDNKEELRSLGAQIAYRAPDPSHGFKYVRYVVQQHPYSLSAWNSYYKVISRIEDRFPHHF
KYILRTREEKPDCVPPIIISGHRFTAISQHQSAARDYLEAYKLDPENPLINLCVGSALIS
LALGFRLQNKNQCIVQAFAFLYRYLRLCGDSQEALYNIARAYHHIGLNTLAAVYYEKALA
IEEEDHPIPKLPYEAGSCAQEDPRPGYCDVRREAAFNLHLIYKKSGATDLARRILKTYCT
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgaccgcggaggcgggggatcccaggctcgacggcaatgaggatttcgag
gaggatgacgaggatgggttcgagttcggggacgccgaggaggcgatgcagtgcgtggag
atggcggggcggagcaccgccgccggggcgcttcgtgcgcaggggcacgactacgaggcg
ctcgcggcgcgcaagcgcaaggccctcgccgaggaccagccccagagggagggttccaag
aggccaaggcaggatgaacttacagaagcggaagcagcaaccatgttcgaccaactgatg
gaaggctttggccttcggcgcaaaagaaggtcaaaagaaggcaagaagaggggaagaaag
aaaggaacaaaaaataagggcagccctgaagttattaaaaagttgggtgatgctactcta
ctttttgctgaagaaaaatttaacaaggcaattcctatactacatgagattgtgcgaatt
gcaccaaatttgccagattcatattatctacttggtagcatttataataagactggtgaa
ctagataaagccataaacttcttgatgcttgccgcctatgtctccccaaaggatgcatct
ctgtggaagaaactcattcccttggcaaagaaaaaggaagatgcttctctggcaagacac
tgcattttaaaagcaatgagagcagacccggaagatgtagatctgaagtatctttgcggt
gatatgtatcgtaaccttcgtgactatcaaaaagctgcagagatatatgagcagatagtt
agaatttatcctgccaatattgccgttcgtaaagtagctgcacagatgtacagagagagt
ggtcaaattgacaaagctattaatttgttggaagactatgttaatactcaaactaccaac
agtgactggactgttctagatttgttgatatccctttatttgagaaataatgctattaat
gaagcactaaagcagatcgagaaggcacgcctacagttgcgatctcaacagaaactacca
gtacaattgcaggcgaaggaagtaatctgccatgcttatctaggagacatgaaacatgct
gagattttccttaatgatgtgcacttggagccatcaaaagatagcactgatgtgactaag
gagctcgcaagcaatttagaaactatgggactatatgagtatgcagtgaagttttacttg
atgattggaaatgttgctaatcataatgatggcagttcatatattgatcacaaagaattg
ggtagttcatatgtcaaagtcgctcagtgctacatggtcttaggggacaaaagaaatgcc
attccttatttttataaagccttacaaagcataaaggacaatatcgatatacgattgacc
ttatcctcccttcttattgatgaggacaagacagatgaagctatcaccttgctttctcct
cccaaaaatccagagttgcagtctgctaacactccagaacaacacaaaccttggtggtgt
gatgggagagtaaagatgcagcttgcaaaaatttattacaataaaggcaagctggaagac
tttgtggatacaatttttcatcctattctagaaacattgaatgttgaatatgtcaatcga
aaggtcaagccaatgagaaagcttacaaatactgttctgcatgaaagagttaaagtattg
ggggaaccacgaccagatagtatatttcaaggattaaggccaatagcatcacctggggag
ttacaaaaggcaaacagagcaaagaaacttatggagaaaagagcagcttcaaatgaggaa
ttaaaatctgatgattcgcaaagaacaaagcaagttcctcctcttcctggtctattgaca
aatatggagcatcatcaacttgtgttaaatctttgtcggactttagcgttgctgcagcga
tattgggatgcactgcagattatcaaccgcactctcaaacttggaaatgatctactcaca
gatgacaacaaagaggaactcagatccttgggtgctcaaatagcttatagagctccagat
cccagtcatggctttaagtatgtccgatatgttgttcagcagcacccatattctctctct
gcatggaattcctactacaaagtgatatcaagaatagaggacaggttcccacatcatttc
aaatatattcttcgaacaagagaagaaaagcctgactgtgtgcctcctataatcatatcc
gggcatcgattcactgcgataagtcagcatcagtcagccgcccgggattacctagaagct
tataaattggacccagaaaaccctcttattaatctctgtgtaggctctgccctgattagt
ttagcccttggcttcaggcttcagaataagaaccagtgcatcgtccaagcttttgcattc
ctatatagatatctgcgcctttgtggggatagtcaggaagccttgtacaacattgctcga
gcatatcaccacattggcctgaataccttagcagctgtttactacgagaaggctttagcg
attgaggaggaagatcatcccattcccaagcttccgtacgaggctggttcatgcgcacag
gaggatccgagaccagggtattgtgacgtacgaagagaggctgccttcaatctgcatctt
atctacaagaaaagtggagcgaccgatctcgctaggcggattctgaaaacttactgtact
gtttag
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integrated database retrieval system
