Panicum virgatum (switchgrass): 120680272
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Entry
120680272 CDS
T07260
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120680272
03036 Chromosome and associated proteins [BR:
pvir03036
]
120680272
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120680272
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
120680272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
RRM_1
HAT_Syf1_CNRKL1_C
TPR_14
NRDE-2
TPR_19
UTP6_C
ARM_TT21_5th
U3_assoc_6
Pox_A12
Lsm_interact
TPR_CcmH_CycH
xRRM
Motif
Other DBs
NCBI-GeneID:
120680272
NCBI-ProteinID:
XP_039817825
LinkDB
All DBs
Position
6N:complement(1858910..1868253)
Genome browser
AA seq
841 aa
AA seq
DB search
MATEEEMPEEATAAAAPAPAGGGGDDAEMRDAAAPSESDSDSSDSDDEGAAGADELRIQA
LEQALQEQPLDYETHVQYIQCLRKSGNIEKLRAAREEMNKYYPLTPKMWLEWAKDEISLS
TSEESFRDVEKLYERGVQEYLSIKLWRDYLDYVEEHDPSVSQCTPAGLSKMRDLFERAIT
AGGLHVTEGSKLWAAYREYEMAILITISDGNDEEKAKQVQRIRTLFHRQLSVPLAEMEST
LVEYKSWEAEQANANDPGSTFDGVPSNVTSAYKKANDMYNERKQYEDQLSNAGASEADKL
QEFLKYLKFEESSGDPARVQVLYERAVSELPVSSDLWIGYTSYLDRSLKVPSVLRSVYYR
ATRNCTWVAELWVHYLLSLERIHSSEEELRHVFERAVQCSFPTIQEYLNVYLTRVHSLRR
RISDGLDFQLIRKTIMDAAEFLSPQLGTKELLHLNAYWAKLERNLGKDLAAARGVWENTI
KKSGSVLEVWQQYISMEMEMGNIHEARSLYKRCYSKRFAGSGSEDICHAWIRFEEENGTL
DDYDLAVKKVTPRLKEFMMFRSQEEAKDEAYSVLNDNPNADDSYQKRKASKMTNKQQPPA
KKRKENPPKSAKSSDDQGSKTQSRHSAAITAVEVGDVTREKVEASTEMNVDTDSRTGNIG
SNEPKPSFYNDKCTIFVSNIDLKANEDDLRRFFSDIGGVTAIRLLRDKFTKKSRGLAYVD
FSDNKHLEAALKKNKQKLLGKKVSIARSDPSKGKKSREAGPSSKGHDNLPQSGDDGAKAP
GSNRPDKEVPKGDVKITGKNTHFAPRSVVKPLGWTSKDEKPDVGPGELKSNEEFRNLLLK
K
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggaagaggagatgccggaggaggccacggcggcggcggcgcccgcgccagct
ggtggaggcggggacgacgcggagatgcgcgacgccgccgcgccctcggaatccgactcg
gactcgtcggactccgacgacgagggggcggccggcgccgacgagctccgcatccaggcc
ctagagcaggccctccaggagcagccactcgactacgagacccacgtgcagtatattcag
tgcttgaggaagtcaggcaacatcgagaagcttcgtgcggcgagggaagagatgaacaag
tactatcctcttaccccgaagatgtggctggagtgggcgaaggatgagatctcattgagc
acaagtgaggaatcttttcgggatgttgaaaagctctacgagcgtggggtgcaagaatac
ctgtccattaagttatggagggattaccttgactatgttgaagagcatgatccatcagtg
tcccagtgtacacccgcaggcctctccaaaatgagagatttgtttgagcgtgctatcact
gctggggggctgcatgttactgaaggcagcaaactgtgggccgcttatagagaatatgag
atggcgatcttgatcaccatcagtgatggcaatgatgaggaaaaggcaaagcaagttcaa
cgtatacgcacgctattccaccgccagttatctgttcctttagctgagatggaatctaca
cttgttgagtataagagctgggaagcagagcaagcgaatgcaaatgacccagggtccact
tttgatggtgtcccctcaaatgtcacatctgcatacaaaaaggccaatgatatgtacaat
gaaaggaaacaatacgaggatcaactaagcaatgcaggcgcatctgaagctgataaactg
caggagtttctgaaatacctcaaatttgaagagtcttctggtgaccctgctcgtgttcaa
gttctttacgagcgagctgtttcagagcttcctgtgtcaagtgatctatggataggatat
acaagctacctggatagaagcttgaaggtgccttctgtactcagaagtgtttattacaga
gccacaagaaactgtacatgggttgctgagctatgggtccattatttgctatctttggag
cgaattcattcttctgaagaagagctacgtcatgtgtttgaacgggcagtacagtgctct
tttccaaccatacaagagtatctcaatgtttatcttactcgagttcatagtctaaggcgg
aggatttcagatgggttggatttccagctgattaggaagacaatcatggatgctgcagaa
tttctctcacctcaactgggaaccaaggaattactgcacttgaatgcgtattgggccaaa
ttagagcgtaatcttggcaaagatcttgctgcagctcgtggagtttgggaaaacactata
aaaaaaagcgggtctgttttggaagtatggcagcagtacatttcaatggagatggaaatg
ggaaatatacatgaggcacgatcactttataagcgctgttatagcaaaagatttgctgga
tctggatcagaggatatatgtcatgcatggataagatttgaagaggagaatggcaccttg
gatgattatgaccttgctgtaaaaaaggtcacacctcggctaaaggagtttatgatgttc
aggtctcaagaggaggctaaagacgaggcttactctgtgctcaatgataatcctaatgca
gatgattcctatcagaaaagaaaagcaagtaagatgaccaataagcagcagcctcctgct
aagaaaaggaaagagaatccaccaaaaagtgccaaatcatcagatgaccaagggtcaaag
acacaaagtagacatagtgctgctatcactgctgtagaagttggagatgtcaccagggag
aaggttgaggcatctacagaaatgaatgtggacactgacagccgaacagggaatataggt
tcaaatgaaccaaagccatccttctacaatgacaagtgcacaatatttgtctcaaatata
gacttgaaggcaaatgaggatgacctgcgacggttcttctctgacatcggtggcgtcaca
gcaataagattgctgagggacaaattcaccaaaaaatcaaggggattggcctatgtggac
ttttcagacaacaagcatcttgaggcagcccttaagaaaaacaagcagaagttgctggga
aagaaagtgagtatcgctcggtcagatccaagcaagggtaagaagagccgtgaggcaggt
ccttcctccaaaggccatgataacttgcctcagagtggtgatgatggtgcaaaagcaccc
ggatccaatagaccagacaaggaagtacccaaaggtgatgtgaaaatcacagggaagaac
acccattttgcacctcggtctgtggttaaacctcttgggtggactagcaaggatgagaag
ccagatgttggcccaggagagttgaaatcaaacgaggagttcagaaatctgttgcttaag
aagtga
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