Panicum virgatum (switchgrass): 120680647
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Entry
120680647 CDS
T07260
Name
(RefSeq) nod factor hydrolase protein 1-like
KO
K01183
chitinase [EC:
3.2.1.14
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120680647
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.14 chitinase
120680647
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_18
Motif
Other DBs
NCBI-GeneID:
120680647
NCBI-ProteinID:
XP_039818085
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All DBs
Position
7N:complement(23390733..23392680)
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AA seq
462 aa
AA seq
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MAASSSAASNLLAIAMAAVVSLSLAAPSAPAPGSTATVRAGFYLAAAARLSPLDALDASL
YTHLYYSALAVHPTTRKLALPADPDQAGLLAAFSPALKSRNRALRTLLSVGADAGTGSQS
QTDPAFASMAADPASRAAFFAAAVALARGSGFDGLDVAWRFPASAVEMADFGFLVCEWRA
AAPPRFLLTATVYFSSHVFDAPQPGVDYPSEAVARCLDWVNVVAFGLRARGAGATAFDAP
LYDRASHFSASYGVVSWIDAGVPAGKLVMGLPLYGRSWFLRNKANSGVGAPVVAAGPKQR
GSNATGVMSYAEVQKLAAAGGGGGGPRRAVTTTYDNASVASYLSVGDVWVAFDGAAVVAE
KLAFAARRGLLGYFLWPVNYDDANLTVSRTASEAWMQNQISSSSRNGTGVRQPVRLPPAL
RSPAGTPGPVPAPTSAAASWLPWTKLNAFLNFGLLILVWCLS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcgtcatccgccgccagcaatctcctcgccatcgccatggccgcggtggtc
tcgctctcgctcgccgcgccgtcggctcctgcgccggggtcgacggcgacggtgcgcgcc
gggttctacctcgccgcggccgcccgcctcagcccgctcgacgcgctcgacgcctccctc
tacacgcacctctactactcggccctcgccgtgcaccccaccacccgcaagctcgcgctc
cccgcggacccggaccaggcgggcctcctcgccgccttctccccggcgctcaagtccagg
aaccgcgcgctccggacccttctctccgtcggcgccgacgcggggacgggctcccagtcc
cagaccgacccggcgttcgcctccatggccgcggacccggcgtcccgcgcggcgttcttc
gccgcggccgtcgcgctcgcccgcggcagcggcttcgacgggctcgacgtcgcgtggcgg
ttcccggcgtccgcggtcgagatggccgacttcggcttcctcgtctgcgagtggcgcgcc
gccgcgccgcccaggttcctgctcaccgccacggtctacttctccagccacgtcttcgac
gcgccgcaacccggcgtcgactacccgtccgaggccgtggcgaggtgcctcgactgggtc
aacgtcgtcgccttcgggctccgcgcgcggggcgccggcgccacggccttcgacgcgccg
ctctacgaccgggcgtcccacttctcggcgagctacggcgtcgtgtcgtggatcgacgcg
ggcgtgccggcgggcaagctggtcatgggcctcccgctctacggccgctcgtggttcctg
cgcaacaaggccaacagcggcgtcggcgcgcccgtcgtcgccgccgggcccaagcagcgc
gggagcaacgccaccggcgtcatgtcctacgccgaggtccagaagctcgccgcggccggc
gggggcggcggcggtcctcgccgcgcggtcaccacgacgtacgacaacgcgtccgtcgcg
tcctacctgtccgtgggcgacgtctgggtcgccttcgacggcgcggccgtcgtcgccgag
aagctcgccttcgctgcgcggcgcggcctgctcggctacttcctgtggccggtgaactac
gacgacgccaacctcacggtgtccagaacagcatcagaggcgtggatgcagaaccagatc
tcgtcgagttccaggaacggcaccggcgtcaggcagccggtgcggttgccaccggctctc
cggtcgcctgcgggaacgcctggaccggtgccggcgccgacgtctgcggcggcctcatgg
ctgccttggacgaagcttaacgcatttttgaattttgggttgctaattctcgtgtggtgt
ttgtcgtag
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