Panicum virgatum (switchgrass): 120680727
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Entry
120680727 CDS
T07260
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
KO
K03267
peptide chain release factor subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120680727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120680727
03012 Translation factors [BR:
pvir03012
]
120680727
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120680727
Translation factors [BR:
pvir03012
]
Eukaryotic type
Release factors
120680727
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
G-alpha
Dioxygenase_N
Motif
Other DBs
NCBI-GeneID:
120680727
NCBI-ProteinID:
XP_039818183
LinkDB
All DBs
Position
7N:complement(12525807..12543432)
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AA seq
536 aa
AA seq
DB search
MEHDAHAEAPPHAVPPPEDATVDDWAREDAEPMPVDSGAAPAEVAAADSAADASPEPAAE
GVKEIESSLQSLELKSNVTAQEDAQEVEDEVEQTKRHLNVVFIGHVDAGKSTAGGQILFL
SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEQTRFTIL
DAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVLLAKTLGVSKLVV
VINKMDDPTVKWSKERYNEIEAKMIPFLKSSGYNVKKDVQFLPISGLLGSNMKTRIDKSI
CNWWDGPCLFEVLDRIEVPLRDPKGPVRMPIIDKYKDMGTVVMGKMESGTIIEGDSLLVM
PNKSHVKVIGISLDDSKVRRAGPAENVRVKLSGIEEEDIMAGFVLSSVANPVGAVTEFNA
QLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELIEEIDMKKKKEADPKKKKPKRKPLF
VKNGAVVVCRIQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVVEVPSAGSPTF
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgacgcgcacgccgaggccccgccgcacgctgttcctccgcctgaggacgcc
accgtcgacgattgggcgcgcgaagatgcggagcccatgcccgtggactccggcgccgcc
cccgcggaggttgccgcggcggattccgccgctgatgcctcgcccgagcccgcggctgaa
ggtgtcaaggaaattgagtcatcacttcagtcgttggagctcaagtcaaatgttactgca
caagaagatgctcaggaggttgaagacgaggtagagcaaacaaaacggcacttgaatgtg
gttttcattggccatgttgatgctgggaaatcaactgctggaggacagatattgtttttg
agtggtcaagttgatgataggaccatccagaaatatgagaaggaagcaaaggataaaagc
cgagaaagctggtacatggcttacattatggacacaaatgaggaagaacgggtcaaggga
aagactgttgaagtcggaagagcccatttcgagacggaacaaacaagattcactattttg
gatgcaccaggtcacaaaagttatgttccaaatatgataagtggtgcttctcaagctgac
attggtgttctggtcatttctgctcgaaaaggtgaatttgaaactggttatgaaaaagga
ggacagacccgtgaacatgtactacttgcaaaaactttaggtgtttctaagctggtagtt
gtaataaataagatggatgaccctactgttaaatggtctaaggaaagatataatgagatt
gaagcaaaaatgattccttttctcaaatcttcagggtacaatgttaagaaagatgtccaa
ttcttgccaatatctggtcttttgggaagcaatatgaaaaccaggatcgacaaaagcatt
tgtaattggtgggatggcccatgtctttttgaagttctggaccgcatcgaagttccttta
cgtgaccccaaaggtccagtaagaatgccaataattgataaatacaaagatatgggcact
gttgtaatgggaaaaatggagtcggggacgatcatagagggtgacagtttgttggttatg
ccaaacaagtctcatgtaaaagtcattggtataagcttggatgatagcaaagtgcgtcgt
gctggaccggctgagaatgttcgtgtcaagttgtcaggaattgaagaagaggatataatg
gctggttttgtactttcaagtgttgctaatccggttggtgctgttactgaattcaacgct
cagttgcagattctagagttgcttgacaatgctattttcactgctggctacaaagctgta
ttgcatatccattctgttgttgaggagtgcgagatcgttgagctcatcgaggaaatcgac
atgaagaaaaagaaagaagcagatccgaagaagaagaaaccaaagaggaagcctcttttc
gtgaagaatggtgctgttgttgtttgccgcattcaggtgaataacttgatatgcatagag
aagttctctgattttcctcagcttggaaggtttacacttcgaactgaaggaaagacagtg
gctgtagggaaagttgttgaagttccttctgctggcagcccaacattctag
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