Panicum virgatum (switchgrass): 120680729
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Entry
120680729 CDS
T07260
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K27740
protein auxin signaling F-box 2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120680729
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Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
LRR_6
Motif
Other DBs
NCBI-GeneID:
120680729
NCBI-ProteinID:
XP_039818186
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Position
7N:complement(25989456..25993985)
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AA seq
573 aa
AA seq
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MTYFPEEVVEHIFSFLPSHSDRNTVSLVCKVWYEVERLSRRAVFVGNCYAVRPEHVVLRF
PNVRALTVKGKPHFADFNLVPPDWGGYAGPWIEAAARSCVGLEELRMKRMVVLDENLELL
ARSFPRFKALALISCEGFSTDGLAAIASHCKLLRELDLQENDVEDHGPRWLSCFPDSCTS
LVSLNFACIKGEVNSGALERLVARSPNLRSLRLNRSVSVDTLSKILVRTPNLEDLGTGIL
TDESESYLRLTSALEKCKMLRSLSGFWDASPICVPFIYPLCHHLTGLNLSYTPTLDYSDL
TKMLSRCVKLQRLWVLDCISDKGLQVVASSCKDLQELRVFPSEFYVAGISPVTEEGLVAI
SSGCPKLSSLLYFCHQMTNDALITIAKNCPNFIRFRLCILEPKKPDAITNQPLDEGFGAI
VRECKGLRRLSMSGLLTDKVFMYIGKYAKHLEMLSIAFAGDSDKGMMHVMNGCKNLRKLE
IRDSPFGDVALLGNVAKYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEIMNELDGSSEI
EENHGDLSRVDKLYVYRTTAGARDDAPNFVKIL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgacctacttccctgaggaggtggtggagcatatattcagcttcctgccatcgcacagt
gacaggaacacggtctcgctcgtgtgcaaggtgtggtatgaggttgagaggctgagccgg
cgtgcagtgtttgttgggaactgctacgcggtgcgccccgagcatgtggtgctgcggttc
cccaatgtaagggcgctgacggtgaaggggaagccgcactttgcagacttcaaccttgtg
ccgcctgattggggcggctacgcggggccatggattgaggcggcggcaaggagctgcgtg
ggtcttgaggagctgcggatgaagcggatggttgtgttggatgagaaccttgagctgcta
gctcggtcattcccaagattcaaggccctcgcccttatcagctgcgaggggttcagcacc
gatgggctagctgctattgcgagtcactgcaagcttttgagggagttggatttgcaggaa
aatgacgtggaggaccatgggcccaggtggctctcctgcttccctgattcctgcacttcg
cttgtgtctttgaattttgcatgcatcaaaggggaggtgaattctggcgcactagagaga
cttgttgctaggtctccgaacttacgcagtttgaggttgaatcgttctgtatcagtagat
acactctccaagattctagtgcgcaccccaaatttggaagacttgggtactggtattttg
acagatgagtctgaatcctacttgaggctgactagtgcactggagaaatgcaaaatgcta
aggagtttgtcaggattttgggatgcttctcctatttgtgttccttttatctatccccta
tgccatcacctaacaggcctaaacttgagctatactcccacactggattattctgatctg
actaaaatgctcagccgctgtgtgaaactccagcgcctttgggtactggattgcatctcg
gataagggtttgcaagtggtggcctccagttgcaaagatctacaagaactcagggttttc
ccatcagaattttatgttgctggtatttctcctgtgacagaagagggacttgttgcaata
tcatcaggctgcccaaaactgagctctttgctatatttctgtcaccagatgaccaatgat
gcactaattaccatagccaagaactgcccaaatttcataagatttagactatgtatcctt
gagccaaagaagccggatgccataacaaaccagccgttagatgaaggctttggtgcaatt
gttcgtgagtgcaaggggctaagacgactgtcaatgtcaggtcttctcactgataaggtt
ttcatgtatattggaaagtatgcaaaacaccttgagatgctttctatagcatttgctgga
gatagtgataaggggatgatgcatgtgatgaacggatgcaagaatctaaggaagcttgaa
attagagacagtccttttggtgatgttgcactcttggggaatgttgccaagtatgagaca
atgcgatccctttggatgtcatcatgcaatgtcacattaaaggggtgccaagtccttgcg
tcgaagatgccgatgctcaatgtggagatcatgaatgaactagatggaagcagtgagata
gaggaaaaccatggtgacctctctagagtggataagttatatgtttaccgcacaactgct
ggagcgagggatgatgcaccaaattttgttaaaatcctatag
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