Panicum virgatum (switchgrass): 120680850
Help
Entry
120680850 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120680850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120680850
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120680850
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
120680850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120680850
NCBI-ProteinID:
XP_039818361
LinkDB
All DBs
Position
7N:35144996..35162307
Genome browser
AA seq
1405 aa
AA seq
DB search
MAKPEEKLRCTKEPFIEDVGAHKIKSIRFSVLSGSEIRKSAEVQVWNSRIYGHDMKPVPN
GLLDTRMGLPSKPKKDPSKQDKDAVCSTCHGPFSDCPGHFGYLKLALPVFNVGFFNCMLD
VLKCICKGCSRVLLVEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLTSCPRCEYRNG
VVKKGRAGLIVIHDCSKILDGHAEELKNALQHKKEKVSTSSVRMLDPATVLSLFRRMTDE
DCELLNLGDRPEKLIVTEIAVPPVPIRPSTVVGNTRTSNEDSITAILKSIVNTNSILKET
LQTGGLFTKCFDCWQQLQLQVVEYVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRT
EYTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCVRNGPYKHPGANFI
ITPDGTKLNLKYGDRRIAARDLKCGYTVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMP
WRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST
QDFLTSSFLITRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLV
RPNAHTKVFLNLAVKEKIYSKKKGKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQ
VGKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL
NRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAETLEHRITGVLNEIRTAAGNVCMD
TLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPA
AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQT
VRNASGGIVQFLYGDDGMDPAKMEGRDGTPLNLDQLFMKVTATCPQRGPDTLSPADIRQM
LEDKLTQHGTSSDGGCSQEFEKGLREFVEKRINLLECTRRALHLDVGHVGKKDSCIEESI
AANISGISAKQLQVFLDTCFSRYHSKTIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA
SMNVTLGVPRIKEIINAAKKISTPIITAELLSRKDVLSARIVKGAMEKAVLGEVASDIKI
ILKPSQANLVVKLDMQLIEALHMGISADTVQLSILSHPKIKLKSEHVRVIDRDKLRIYPA
GTDKSKLRLELHNLKSMLPKVIVKGIPTVERVVIDEIKKKDNTVEKYNLLVEGTNLLAVM
GTPGVDARITKCNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTY
KGEVLGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLG
TGILKVRQRLDHLPEFKYQPDPILS
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggaggagaagcttcgctgcacgaaggagcccttcatcgaggacgtcggc
gcccacaagataaagagcatccggttcagtgtgctctcgggcagcgagattcgcaagtcc
gctgaggtgcaggtctggaacagccggatctatggtcatgacatgaagccagtccccaat
ggtttgctcgacacgcgaatgggactccctagcaaaccaaagaaggatcctagcaaacaa
gataaggatgctgtgtgcagcacctgccatggtccattttctgattgtcctggtcatttt
ggttacctgaagcttgcccttccagtttttaatgtcggctttttcaactgcatgctggac
gtgttgaagtgtatctgcaagggctgtagcagggttcttcttgtggagaaagaccgccga
gagtttctgaagaagatgagaaatcccagagctgatgcgctacagaaaagtgctaccatg
aaaaaagtgagggacaaatgcaaactaaccagctgcccccggtgtgaatacagaaatggt
gtagttaaaaaaggcagagcaggcctgatagtgattcatgattgcagcaaaattttggat
ggacatgcagaagaactgaagaatgcattacaacacaagaaagaaaaagtctccaccagt
tcagttcgcatgttagaccctgcaactgttctctctcttttcagaagaatgactgacgag
gattgtgaattgctaaaccttggtgataggccagaaaaacttattgtgacggagattgca
gtgccacctgtacctatacggccttctactgttgttggtaatactagaacaagcaatgaa
gatagcattactgctatattgaagagcattgttaatacaaattccatacttaaggagacc
cttcaaactgggggtctgttcaccaagtgttttgattgctggcaacaacttcaacttcaa
gttgttgaatacgtaaatagcgatgccccctgtcttcctgagtcgcaacatcgtggtctt
gttcaacgactcaaagggaagactggccgatttcgtggtaacttatccggaaaacgtact
gagtacactggaaggactgtcatatctcctgatccaaatttgagaataacagaggtagct
attcctgtgttgatggctcgagtcttgacttatcctgaaagggtttcaaactataacctt
gagaagctgcgtcagtgtgtacgaaacggaccatataaacatccaggggctaattttatt
ataacccctgatggcacaaagctgaacttaaagtatggtgatagaaggattgctgcacgg
gatttaaagtgtggctatacagttgaaaggcatttagaggatggtgacattgtcctgttc
aacagacagccgagtttgcatagaatgtcgattatgtctcacagggcaaggataatgcca
tggagaacactgagatttaatgagtctgtttgcaacccgtataatgctgattttgatggc
gatgaaatgaatttgcatgtccctcagacagaggaagctcgcactgaagcacttatgctc
atgggggttcagaataatttatgtactcctaagaatggggagatactggttgcttccaca
caagatttcttgacctcatcttttctgattacaagaaaagatactttctatgatagatct
tcctttactcttttgtgctcataccttggtgatgcaatggagaacattgatttgccaaca
ccagccttgattaaacctatcgaactttggactggtaaacagttattcagtgtgttagtt
cgacctaatgcacatacaaaggtgtttctgaatcttgctgttaaagaaaaaatttattcg
aaaaagaagggaaaaaaagagggagaagaggaggaaaaggaaacaatgtgcggaagggaa
acaatgtgtcccaatgatggttatgtctacttccgaaatagtgaactgttgtctggacaa
gttgggaaggccacactaggtaatgggaacaaggatggcatttactctgttcttctaaga
gattacaattctcacgctgcagcaagctgtatgaatcgcttggcaaaatttagtgcaaga
tttattgggaaccatggtttttccattggtgtggatgatgtccaaccaggagaacattta
aatcgacaaaagaaaaagaaaatagatgaggggtacaaacaatgccatgatcttatttct
ttgtttgccaaaggtgcactcgcattgcatcctggttgcaacgcagctgaaacattggag
cataggataactggcgtgttgaatgaaatcagaacggctgctggaaacgtgtgcatggat
acacttcactggaggaacagcccattgattatgtctcagtgtggatctaaaggttctcca
atcaatatcagtcagatggttgcttgtgttggccagcaatcagttggagggcgtcgcgcc
ccagatggttttatagatagaactcttcctcactttcctataaattcgaagacccctgca
gctaaaggttttgttgctaattcgttctatactggtttgactgctactgagtttttcttc
cacacaatgggtggccgagaaggtcttgttgacacagcagtcaaaacagcagaaactgga
tatatgtcccgcagattgatgaagggtttagaagatctctctgttttctatgatcagaca
gtccgtaatgctagcggtggtatagttcagtttttgtatggagatgatggcatggatcct
gcaaagatggaaggaagagatggcacacccttaaatttggatcaattgtttatgaaagtc
acggcaacatgtcctcaaaggggaccagatacattatctccagctgatatccgacagatg
ttggaggataagctcacacaacatggcacctcatctgatggtggttgtagccaagagttc
gagaaaggcttgagagaatttgttgagaaacgtataaacttactggaatgcacaagaagg
gcacttcatctagatgtgggccatgtaggaaagaaagattcttgcattgaagaatccatt
gctgctaatatatctggtatatctgcaaaacaactacaggttttcttggatacttgtttt
tctcgttaccactcaaagacaattgaagcaggagcatctattggagcaattggagctcag
agtattggagagccagggactcagatgacactgaaaacatttcattttgcaggagtagct
agcatgaatgttactcttggtgttcctcgcatcaaggaaattatcaatgctgctaaaaag
ataagcactcctattatcacagctgagcttctgtctaggaaagatgtgctgtctgcacgc
attgtgaaaggagctatggagaaagcagtgctgggcgaggtagcatcagacataaagatt
atcttgaaaccaagtcaggcaaacttggtggtcaaacttgatatgcaacttatagaagct
ctgcacatgggaatatctgctgacactgtgcagctgtcaattttgagtcatccaaagatc
aagctaaaatctgagcatgtccgtgtgattgatagagacaagttgagaatatatccagct
ggaacggataagtccaaacttcggcttgagctgcataacctcaaatccatgcttccaaaa
gtgattgtgaagggcattccaactgttgaaagagttgttatcgacgaaataaaaaagaag
gacaacactgtagaaaaatacaacttgttggttgaaggaacaaacctcctggcagtcatg
ggtaccccaggagttgatgctaggattacaaaatgtaatcatatcatggaaatgaacagc
acacttggaattgaagcagctaggagatctattattgatgaaattcagtacacaatgaaa
agtcatggcatgaatattgatgtgagacatatgatgcttctggcagatttgatgacatac
aagggtgaagttcttggcattactagatatggcattgcaaagatgaaaagcagtgtgctg
atgcttgcttcgtttgagaaaacctccgaacatctattcaatgcctcatacagtggtcgt
gaggaccagatagagggagtcagcgaatgcattatcatgggcattcccatgcaacttggt
accggtattctcaaagtcaggcaaaggctggaccatcttcctgaattcaagtaccagcct
gacccgatactgtcgtaa
DBGET
integrated database retrieval system
