Panicum virgatum (switchgrass): 120681001
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Entry
120681001 CDS
T07260
Name
(RefSeq) heat stress transcription factor B-4c-like
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120681001
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120681001
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Gene cluster
GFIT
Motif
Pfam:
HSF_DNA-bind
Motif
Other DBs
NCBI-GeneID:
120681001
NCBI-ProteinID:
XP_039818498
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Position
2K:complement(47800887..47802791)
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AA seq
403 aa
AA seq
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MERCGSWECDAAAQAAAQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEF
ARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKTSAS
AASPSPPPFFGPPHFPLFHPGASHPHQFVGGDDGVAMAAAAHGMGVAFPHPHWRDPHAAA
PVATRLLALGAPPAPSPLPPAEGAGAGGAGAGRAATAAVLMEENERLRRSNTALLQELAH
MRKLYNDIIYFVQNHVRPVAPSPAAAAFLQGLGLQARKKPPATTPVAAAAGLNNSGGSTT
SSSSLTIAEEPSPPPQQQADKSGGAGEAGSCGTARSAAAPTMLFGVHLSAAPGAKRPASP
EEDEHEPATSPARKPRLALDAGADLSLSVAAPPSAASSPASTS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtgcgggagctgggagtgcgacgcggcggcgcaggccgcggcgcagaaggcg
gtgccggcgccgttcctgaccaagacgtaccagctggtggacgacccggccacggaccac
atcgtctcctggggggacgaccgggtctccaccttcgtcgtctggcgcccgccggagttc
gcgcgggacatcctccccaactacttcaagcacaacaacttctcctccttcgtccgccag
ctcaacacctacggcttccggaaggtcgtgccggagcggtgggagttcgccaacgagttc
ttcaggaagggggagaagcagctgctctgcgagatccaccggcgcaagacgtcggcgtcc
gcggcgtcgccgtcgcccccgcccttcttcggcccgccgcacttccccctcttccacccg
ggcgcctcacacccccaccagttcgtgggcggcgacgacggggtagcgatggcggcggcc
gcgcacggcatgggcgtcgcgttcccgcacccgcactggcgggacccgcacgccgccgcg
ccggtggccacgcggctcctcgcccttggcgctcccccggcgccgtcgccgctgccgccc
gccgagggagccggcgcgggcggggccggcgcggggcgcgcggccaccgcggccgtgctg
atggaggagaacgagcggctgcggcgcagcaacacggcgctgctgcaggagctggcgcac
atgcgcaagctctacaacgacatcatctacttcgtgcagaaccacgtgcgccccgtggcg
cccagcccggcggccgcggcgttcctgcagggcctcggcctgcaggcgcgcaagaagccg
ccggccaccacccccgtcgcggccgcggccgggctcaacaactccggcgggagcaccact
tccagcagctcgctcaccatcgccgaggagccctcgcccccgccgcagcagcaggccgac
aagagcggcggcgccggggaggccggcagctgcggcaccgcgcgctccgccgccgcgccc
acgatgctcttcggcgtgcacctcagcgccgccccgggcgccaagaggccggcctccccg
gaggaggacgagcacgagccggccacgtcgcctgccaggaagccgcggctggcgctggac
gcaggcgccgacctaagcctttccgtggcggcgccgccgtccgccgcctcgtccccagct
agcactagctag
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