Panicum virgatum (switchgrass): 120681354
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Entry
120681354 CDS
T07260
Name
(RefSeq) protein transport protein SEC23-like
KO
K14006
protein transport protein SEC23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120681354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120681354
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120681354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
120681354
NCBI-ProteinID:
XP_039818792
LinkDB
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Position
2K:48119821..48127976
Genome browser
AA seq
762 aa
AA seq
DB search
MSEFLDLEAQDGIRMPWNVIPGTKQEALNCVIPVSAIYTPLKSIPDIPVLPYSPLRCRMC
RSILNPFSIVDYVAKIWVCPFCFQRNQFPQHYSSISENNLPAELFPQYTTVEYISSTETG
PVVPPVFIFVVDTCMIEEEIGYLKSALAQVVELLPDNSLVGFITFGTYVQVHELGFGLLP
KSYVFKGTKEVTKEQILEQMCFFAGKKMPTTGVIAGTRDGLSSESISRFLLPASECEFVL
NSVIEEMQKDPWPVPADQRASRCTGVALSVAANLLGVCVPGSGARIMAFVGGPSTEGPGS
IVSKSLYEPLRSHKDLDKDSAPLYDKAVKFYDQIAKQLVHQGHVLDLFACAVDQVGVAEM
KVAIEKTGGMVVLAESFGHSVFKDSLRHIFQSADDKLGLSFNGILEINCSKDVKVQGIIG
PCTSLEKKSPLSSDTVIGQGNTSAWKMCGLDKKTSLCFVYDIAKKDGQDSIGQSTSNQFY
FQFLTYYQHNEGMMRLRSTTISRRWVSGTDNVEELVAGFDQEAAAAVMARLVSFKMETEV
DFDPVRWLDRALIRICSKFGDYQKETPSSFSLSPRLSIFPQFIFNLRRSQFVQVFNNSPD
ETAYFRMMLDRENVANAVVMIQPSLLSYSFQSGPEPVLLDVTAIASDKILLLDSYFTVVI
FHGVTIAQWRKAGYQDQEGHEAFAQLLKAPHEEANSIIKERFPVPRLVVCDQYGSQARFL
LAKLNPSVTYNSDNPAPGGDVIFTDDVSFQVFMDHLQRLSVQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagttccttgacctagaggcacaagatgggataaggatgccctggaatgttatt
ccaggcacaaagcaggaggctttgaactgtgtgattcctgtttctgctatctatacacct
ctgaagtcaattcctgatattccggttctcccatattcaccccttcgctgtcgcatgtgt
cgttccatcctcaatcctttctccattgttgactatgttgctaagatctgggtctgtcca
ttctgctttcagcgcaatcaattccctcaacactactcctcgatctcagaaaataatctc
cctgcagaactctttcctcagtataccaccgttgagtacatatcatcaaccgaaactggt
cctgtagtgccaccggttttcatttttgttgtagatacttgcatgattgaagaagaaatc
ggttatttgaagtctgcattggcacaagttgttgagctattgccagataattcccttgtt
ggattcattacttttggaacgtatgtgcaggttcatgaattgggttttggcttgttgcct
aagtcatatgtgttcaagggaacaaaggaggtcaccaaggaacaaatattggaacaaatg
tgcttctttgcagggaagaaaatgcccacaactggggtgattgctggtaccagagatggt
ctttcatccgagagcatctctaggttcctgctgcctgcttctgaatgcgagtttgtgttg
aactcagttatagaagaaatgcaaaaggacccttggcctgtaccagctgatcagcgggca
tcaaggtgcactggagttgccttaagtgttgcagccaatctccttggggtttgtgtccct
ggatcaggtgctaggataatggcatttgttggtggtccatctacagaaggccctggttct
attgtatccaaatccttatatgagccacttcgttcacacaaggaccttgataaagactcg
gcaccactatacgacaaagctgttaagttctacgatcaaatagcaaagcagcttgtgcac
caagggcatgtgctggatttgtttgcctgtgcagtcgatcaggtaggagtagctgaaatg
aaggttgcaattgagaagactgggggaatggttgtgcttgctgaaagttttggccattct
gttttcaaggactcacttcgccacatttttcagtcagcagatgacaaacttggtctatca
ttcaatggtattcttgaaatcaattgttcaaaggatgtcaaggttcaaggcatcattgga
ccttgtacttccctggagaagaaaagtcctttgtcgtcagacactgttattggtcaagga
aacactagcgcttggaaaatgtgcggtcttgacaaaaaaacatcactttgctttgtatat
gacattgcaaaaaaagatggtcaagattcaattggtcaatcaacaagcaatcagttctac
tttcaattcttaacctactatcagcacaatgagggtatgatgcgattaagatcaaccaca
atatccagaagatgggtctctggcaccgacaatgtggaggagttagtagctggctttgat
caagaagctgctgctgcagtcatggcacgcttggtgtcatttaagatggaaactgaggtt
gattttgacccagtaagatggcttgatcgagctttgatacgtatatgttctaaatttgga
gactatcagaaggaaacaccctcgtccttcagtttatctccgcgtctatcaatatttcct
cagtttattttcaatttgaggcgttctcagtttgttcaggttttcaataacagtcctgat
gaaactgcatattttaggatgatgttggacagagagaatgtagccaatgcagttgtgatg
attcagccttcacttttatcttattcatttcagtcaggaccagagccagttctcttggat
gtaactgcaattgcttctgacaagatccttttgttggattcttattttactgttgtcata
ttccatggggtaaccattgcccagtggcgaaaagctggttaccaagatcaagaaggtcat
gaggcgtttgcccagttgttaaaagctccacacgaggaagctaattcaataataaaggaa
cggtttcctgtgccccgtttggtagtctgcgatcaatatggatctcaggctcgattttta
ctggcgaagctaaatccatcagtgacgtataactcagataatcccgcccctggtggagat
gtcatcttcactgatgatgtgagcttccaggttttcatggaccatctccagcggctatca
gtccaatag
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