Panicum virgatum (switchgrass): 120681388
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Entry
120681388 CDS
T07260
Name
(RefSeq) F-box/LRR-repeat protein 4-like
KO
K10268
F-box and leucine-rich repeat protein 2/20
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120681388
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120681388
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Motif
Pfam:
LRR_SKP2
LRR_FBXL15
F-box
PRAME_C
F-box-like
Motif
Other DBs
NCBI-GeneID:
120681388
NCBI-ProteinID:
XP_039818811
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Position
7N:complement(49587154..49590210)
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AA seq
548 aa
AA seq
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MPANHSPFPSPHPRGRPGWPIRWLDWPPSAPTAPTSSRHAAAVLGGGGCRRPGCYAGTDA
ALCDDLLQEVFRLLPPAAAPAVSLVSRRWLSLLRASTSSLTLRLPASSDAAAATLAALLS
HYPFLSALTVVSAATPARDADAVLLAVAAAPAAARFSTLRLLPDSAVSPAALLAACPALS
GLTSLHLTAVRPLSFRWLELLPHLKSFALVNSAASVDYAGSGSDDADGGEAEAEAARALP
LERLSLCGIRSGDRGLGWLWRQCGSLKWLQLRACDGTGDGPASPSFAGCLAGLLALELRA
CRAVADRVLLLAADHCHALTSLLVYDGGSSEALHRFIQHRAAGLHTLDLRLPLDLHNDHL
LAIGAEPVHGGLEPTHNLAALRLQSCVLITGDGLRSLARTATGAGIEELALVSCDVVERE
PGLLTFLSQSMRRLRRLDLSYNETLSDKVIGAMLSSCRNLIDIRLRGCRGLTGASLVSLL
RHCGQSLEILDISCCPSIAVGNVEFFVQRATRLNHIIIEESAISEELKAIAQKKGMKIRS
LLPYEGPF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgccagctaaccactcacccttcccttccccccacccgcgcggccggccgggctggcca
atccgatggcttgactggccccccagcgcaccgacggcgccgacaagctcccgccacgcc
gccgccgtcctaggcggcggcggctgccgtcgccctggctgctacgccggcacggacgcc
gcgctctgcgacgacctgctgcaggaggtgttccgcctcctgccgccggccgccgcgccg
gccgtgtccctcgtttcccggcgctggctctcgctcctcagggcctccacgtcgtccctg
accctccgcctgccggcctcctcggacgccgcggcggcgaccctcgccgcgctgctgtca
cactacccgttcctctccgccctgaccgtcgtctccgctgctactccggcccgggacgcc
gacgccgtgctgctcgctgtcgcggccgcgccggccgccgccaggttctccacgctgcgg
ctcttgcccgattcggcggtctcccccgccgcgctgctcgccgcctgccctgccctgtcc
ggcctgacgtcgctccacctcaccgccgtccgccccctgtcgttccgctggctcgagctc
ttgccgcacctcaagtcgttcgccctcgtcaactccgccgccagcgttgactacgctggc
tcaggctcggatgatgccgacggtggggaagccgaggccgaggccgcacgggcgctgccg
ctggaaaggctgtcgctttgcggcatccgctccggcgaccgagggcttggatggctgtgg
cggcagtgcgggagcctcaagtggctgcagctgcgcgcctgcgacggcactggggatggc
cccgcgtcgccatccttcgcgggttgcctcgctggattgctggcgcttgagcttcgtgct
tgccgtgctgtcgccgaccgtgttctccttcttgcagctgaccattgccacgcgctgaca
tccctcctggtgtatgatggcggcagcagcgaggctcttcaccggttcattcagcaccgt
gctgctggtctgcacaccttggaccttcgcctaccgctcgacctgcacaacgatcatctc
cttgccattggagctgagccagttcatggtggtctagagccaacacataacctagctgca
ctccgccttcagagctgcgtcctaatcactggggatggactccggtctctcgcacgaaca
gccactggggcgggcatcgaagagcttgctttggtgagctgtgacgtggtggagcgggag
cccgggttactgacatttctcagccaaagcatgcggcgtcttcgtcgccttgacttgtct
tacaatgagacactgagtgataaggtgatcggtgccatgctgtcatcctgccggaatctc
atcgacatcagactcaggggatgccggggcctaacgggagcctccctggtctcacttctt
aggcactgcgggcagtcgctggagatccttgacatctcctgctgccctagcattgcagta
ggcaatgtcgaattctttgttcagcgcgccactcggttgaatcatattataatcgaggag
agcgcgatatcagaggaattgaaggcaattgctcagaagaaaggtatgaagatcagatca
ttattgccatacgaaggaccattctga
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