Panicum virgatum (switchgrass): 120681442
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Entry
120681442 CDS
T07260
Name
(RefSeq) oligoribonuclease-like isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120681442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120681442
03009 Ribosome biogenesis [BR:
pvir03009
]
120681442
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120681442
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120681442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DUF6604
Motif
Other DBs
NCBI-GeneID:
120681442
NCBI-ProteinID:
XP_039818870
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All DBs
Position
7N:complement(21463587..21470047)
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AA seq
253 aa
AA seq
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MSKLANMFAVLNLDAEDDREEAEKPASSKAEADAAHRKPEKSSQSKAMVVNYDGENIASS
SSDYRMPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEGPDLVIRQSKECLDDMNE
WCQVHHVASGLAEQVLKSEISERDAEKQVSCVSHFQVLDFIKRYIGSATPLIAGNSVYMD
LLFLKKYMPQLAGIFSHVIVDVSSITALCSRWFPKEKKAAPRKEKNHRALDDIRESIKEL
QYYKENIFKSRRS
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactcgccaacatgtttgcggttcttaatctggacgccgaggacgaccgagag
gaagcggagaaaccagcatccagcaaagccgaagctgatgctgcccacagaaagcctgag
aaaagcagccagagtaaagcaatggttgtaaattatgatggagaaaacattgcttcatca
tcaagtgattacaggatgccattggtatggatagacttggaaatgactggtttggacatc
actaaagatcgcatactggagattgcttgcattataacagatggtaaacttaccaaacga
atagagggtccagacttggttataagacagagtaaggaatgcttagatgacatgaatgaa
tggtgtcaagtccatcatgtggcaagtggactcgcagaacaagtactaaagagtgagatt
tctgagcgtgatgcagagaaacaagtttcttgtgttagccattttcaggtgttagacttt
attaagaggtatataggttctgctactccattgatagctgggaattctgtgtatatggat
ttactatttttgaagaagtatatgccacaacttgcaggcatattctctcatgtgatagtt
gatgtgagcagtataacagctttgtgcagccgctggttcccgaaagaaaagaaagctgct
ccaagaaaggagaaaaaccatagagcgttggacgatatcagagaaagcatcaaggagcta
caatactacaaggagaacattttcaagtcacggagatcttag
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