Panicum virgatum (switchgrass): 120681477
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Entry
120681477 CDS
T07260
Name
(RefSeq) DDB1- and CUL4-associated factor homolog 1-like
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pvir01001
]
120681477
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120681477
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120681477
Protein kinases [BR:
pvir01001
]
Serine/threonine kinases: Other
Other
120681477
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120681477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WDR55
WD40_Prp19
WD40_CDC20-Fz
ARM_ARMC5
ANAPC4_WD40
Beta-prop_EML_2
Beta-prop_TEP1_2nd
LisH
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
120681477
NCBI-ProteinID:
XP_039818908
LinkDB
All DBs
Position
7N:complement(50740168..50748668)
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AA seq
1894 aa
AA seq
DB search
MPEMDPAELASTPPPEDEEALVARAQDVISRILEREHDPNPNPRLLRALATMCELHEARY
LQLSASNPMPNNTNTRSTHTIGKLANLFRDNDDFYELVFCKFLSDTSYSVAVRAAAARLL
LSCHSTWTPQYPHAFEDSIIENIKKWVTEDSEVSSESEWKNLGRNKPTDAEMLRTYAIGL
LAMALCSGGQLVEDVLNMGVSAKLMRFLRIRVLGDASSSQKDSNHPQDTKHPRGRDDSRG
KSRLAQDVFRLDGTRVGCGILTDLTAEKYNEPGVGMRQVHGERLMDDTVASSDNSDAPEV
DIDRSYGTSICDVKSKFGERHSVMRLVKDEDISENGEMLKRKLNRATSRLRVKGKAGESL
PESEIMPLSPTSGLRIGGRAIRDRNAVRVDDPKKATDVNERSAGLESFNAISREEYEDRF
RDCIIGLKDISDIVLKAVRAAESEARSANAPDEAVKAAGDAAAELVKSAALEVWKSESNG
DAVVLAAEKAASAVVEAAVSTSVSRSSNQVGEQRAVEEAMQTSKDQDLENFVIIDQGRLL
QLREKYSIQCLQILGEYVEALGPVLHEKGVDVCLALLQRSMKEHEGHHLFALLPDVLKLI
CALAAHRKFAALFVDRGGIQKILSVPRINQTYMGLSACLFTFGSLQSTMERVCALSSDTL
DSVVELALQLLKCPQDLARKSAAIFFAAAFVFKAVLDLFDARDGMQKLLDILYGCASGRS
GGNSSGLGSSHINQGNDQSPAEVLTASEKQVAYHSCVALRQYFRAHLLQLVDSIRPSKSI
RSIARNTSSARAGYKPFDISNEAMDAVFRQIQRDRKLGPALVRARWPVVDKFVASNGHMT
MLELCKFQAHGDRYLRDLTQYAIGVLHIITLMPHPNVRKPIVHATLSNNRVGMAVLLDAV
KSFDYIDHEVICPALNVLVNLVCPPPSISNKPSSTANQQPPAAQVLVSESRDRNFEKSIS
DRNLLANQGESRERSADCNPSERAPCTPVVPSGVVGDRRITLGVGVGGPGLAAQLEQGYR
QAREVVRANNGIKILLQLLSSRMVTHPVAIDSIRALACRVLLGLARDDAIAHILTKLQVG
KKLSELIRDTSAQSLGGDSGRWQAELTQVAIELIGVLTNSGKETTLAATDAAAPALRRIE
RAGIAAATPISYHSRELMQLIHEHLLGSGFTATATMLQKEAGLAPLPLTAAVLPAHQVSA
LEASSVQQQWPSGRVQGFLSDKTNISTDQSDLRSDSALPSSKKKALTFSSSFSQRTLSPH
PISSNRAGNTLKSPVPIGADTGDAEPLHKTPLSLPLKRKFVDVKDQSSASSVKRPATADQ
IHQPSAFQTPAPTRKGLSVAVDSPTTFNCGRTNFNNISTDNLDNSQGTPGTVTTTAHPGV
NDQQSGNLERMTLDSLVVQYLKHQHRQCPAPVTTLPPLSLVHPHVCPEPSRSLSAPANIS
ARMGSREISRQFSGIQIPRRDRHFIYSRFKQCRVCRDEASLLTCMTFLGDASRVAAGNHT
GELRIFDCNTANLLETQTCHQHLVTMMESTYSGGNELILTSSLNEVKIWDAFSVSGGPLH
TFEDCKAARFSHSGTLFAALSTDISQREIQLYDVQTYTLTQRLPDSTNNSSSGRGYVQPI
IHFSPSDTMLLWNGVLWDTREANPVHQFDQFTDYCGGGFHPAGNEVILNSEVWDLRKFKL
LRSVPSLDQTVIKFNGTGDVIYAILRRNLDDVTSSINARRVRHPLFPAFRTIDAVTYSDI
ATVQIDRCVLDLATEPNDSLIGVVALDDHQELFSSARLFEVGRKRITDDDSDPEDAGDTD
DEDDDDDNSDDGLRLAPVLEGESDSEDVSNSSDDGGDDDIPSSDEIEDDPEFIDDGDLDG
GGGLLDVMGDAEGEDDDSDMIGSFSSGDEDGWIL
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgccggagatggaccccgccgaacttgcctccaccccgccgccagaggacgaggaggcg
ctggtcgcccgcgcccaggacgtcatctccaggatcctcgaacgcgagcacgaccccaac
cccaacccccgcctcctccgcgccctcgccaccatgtgtgagctccacgaagccagatat
cttcagctatctgcatctaaccctatgcctaacaacacaaacacaaggagcacccataca
attggcaagctagcaaatctgttccgggataatgatgatttttatgagttggtgttttgt
aagtttttatcggatacatcctactctgttgccgtacgtgctgccgctgctaggctgctc
ctgagctgccattctacctggacgcctcagtatcctcatgcttttgaagactctatcata
gaaaatattaaaaaatgggttacagaggattctgaagtgtctagtgaatctgaatggaag
aatctaggaagaaataaacccacagatgctgagatgttgagaacatatgcgattgggttg
ctcgcaatggcgttgtgcagtggtgggcaattggtggaggatgtcttgaatatgggggta
tcagcgaagctcatgcgctttttgcgcataagagtccttggggatgcctcatcttctcag
aaagattctaaccatccgcaagacaccaagcatcctcggggcagagatgatagcaggggc
aaatcacgtctggctcaagatgtttttcgactggatggaacaagggttgggtgtggaata
ttaaccgacctaactgcagagaagtacaacgaacccggtgttggaatgaggcaggtacac
ggagaaaggttgatggatgacactgttgcttcatcggataattctgatgcccctgaggtt
gatattgatcggtcttatggcacaagtatttgtgatgtaaagtcaaaatttggggaaagg
cattctgtgatgaggcttgttaaagatgaagatatcagcgaaaatggtgaaatgttgaag
agaaagctgaatcgagccacttctcgacttagagtgaagggcaaagctggtgaaagcttg
cctgaatcagaaataatgcctttatcgccaacctctgggttgagaataggaggtcgggct
atcagagacaggaatgcggtgagggttgatgacccaaagaaggcaactgatgtgaacgag
agatctgcaggtcttgagtcatttaacgcaatttccagggaagaatatgaagaccggttc
agggattgcattattggcttgaaggatatttctgacattgttttgaaggcagtgagagcc
gctgagtccgaggccagatctgcaaatgcacctgatgaagctgtaaaagcagcaggtgat
gctgctgctgagcttgtgaaatctgctgctttggaggtttggaaaagtgaaagtaatggt
gacgcggttgtattagctgcagagaaagctgcatctgctgtagtagaggctgccgtgtca
acaagtgtctcacgaagctcgaaccaagttggtgaacagcgtgcggtagaagaagctatg
caaaccagcaaagaccaggatttggaaaattttgttatcattgaccaagggcggctcttg
caactaagagaaaaatatagtatccagtgtttacagattttgggagagtatgttgaagct
ttgggtcctgttctccatgaaaaaggtgttgatgtgtgcctcgcattattgcaaaggagc
atgaaagagcatgagggacaccacctctttgctctacttcctgatgtccttaaattaatt
tgtgcactggctgcccaccgaaaatttgctgctctctttgttgatcgtggtggtattcag
aagatcctctctgttcctaggattaatcagacatatatgggtctttctgcctgcttattc
acttttgggtctcttcagtctaccatggaacgtgtttgtgcactctcatctgatacactt
gacagtgttgttgaactagcacttcaacttctcaagtgcccacaagatttagctagaaaa
agtgcagccatttttttcgctgctgcttttgtgttcaaagctgttctggatctgtttgat
gcacgagatgggatgcaaaagcttcttgatatcctatatggatgtgcatctggaagatct
ggtggtaactccagtggacttggatcctcccatataaatcaagggaatgatcagtcgcct
gctgaagttttgactgcatcagaaaagcaagttgcatatcattcatgtgttgcactgcgg
caatactttagagctcatctccttcagcttgttgattccattcggccaagcaaaagcatc
cgtagtattgctcggaacacttctagtgcaagagctggttacaaaccttttgacattagc
aatgaggccatggatgctgtctttcgtcagatccagcgggacagaaagttaggccctgct
cttgtgagagctcgttggcctgtggttgacaaatttgttgcctcaaatggtcacatgact
atgctagagttatgcaagtttcaggcacatggcgatcgatatttgcgtgacctaactcaa
tatgcaattggagttcttcacattataacacttatgccacacccaaacgtccgcaagcca
atagtgcatgcaacattaagcaacaatcgtgttggtatggctgttttattagatgcggtg
aaaagtttcgactatattgatcatgaggtgatctgtccagcattgaatgttctcgtcaat
cttgtatgcccacctccatctattagtaacaagccatcctcaactgcgaatcagcaacct
ccagctgcgcaagtacttgtttcagaaagcagagacaggaactttgaaaaaagtatttca
gataggaatcttctagcaaatcagggtgaatctcgtgaacgctcagctgattgcaaccct
tctgaaagagctccttgcacacctgttgtgccatctggagtagtcggagatcgaagaata
acattaggagttggagttggaggtcctggtcttgctgctcaattggaacaagggtatcgt
caagctcgagaagttgtaagagcaaacaatggcataaaaattcttttacagcttctcagt
tctcggatggttacacatcctgtggctatagattctattagagcccttgcctgccgtgtc
ctgctgggtctggccagagatgatgcaattgcacatatactgacaaagctccaggtgggc
aagaaattatcagaactgatccgtgataccagtgctcagtcattggggggtgatagtgga
agatggcaagctgagctgacccaagtggcaattgaactaattggggtcttgacgaattct
ggaaaagaaacaacattagcagcaactgatgctgctgctccagcactgaggcgcattgag
cgagctgggatagctgctgctactcctatctcctaccactcgagggaactgatgcagcta
atacacgaacatctccttgggtctggttttactgccactgccaccatgctgcagaaggag
gctggtcttgcacctttgccattgacagcagcggtgcttcctgcccaccaagtttctgcc
ctagaagcatcatctgttcagcaacagtggccctctgggcgtgttcagggatttctctca
gataaaacaaatatatccacagatcagtctgacctgagatctgattctgccctgccttca
tctaagaaaaaggcactaaccttctcatccagtttctcacaaagaactctatctccacat
cccatttctagtaatagagcaggcaacacccttaaaagtcctgtacccattggggctgat
actggagatgcagagccattgcataaaacaccactgtcactgccacttaagaggaagttt
gtggatgtgaaggatcaaagttctgcatcgtcagtgaagcgccctgcaacagctgatcaa
atacaccaaccttctgcgttccaaactcctgctcctactcgcaaaggtctgtcggtagca
gtagattctcctactacatttaattgtggtcggacaaacttcaacaacatttccactgac
aacttggacaattctcaaggcacgccgggaacggtgacaactacagcacatcctggtgtg
aatgatcaacagtctggaaatttagagcgtatgacactcgattcactggtggtacaatac
ttgaaacatcaacatcgccagtgtcctgctccagtcacaactttgccgccactttctcta
gtgcacccacatgtttgcccggagcctagtcgcagccttagtgcaccagcaaacatatct
gctcgtatgggaagccgtgagataagtaggcaatttagtgggatccagatacctcgtagg
gatcgtcattttatatacagtcggttcaagcaatgtcgtgtttgccgtgatgaggcatca
ctgttgacttgcatgacatttcttggtgatgcatctcgagttgcggctggtaaccacaca
ggtgaattaagaatatttgactgcaacacggcaaatctcttggagacccaaacatgccac
caacatctggttacaatgatggagtctacatattctggtggaaatgagctgattctcaca
tccagcctaaatgaggttaagatctgggatgccttctcggtatctggggggcctttgcac
acatttgaggattgcaaagctgctaggtttagccactccggaactttatttgctgccctt
tctactgatatatctcaacgggagattcagctgtacgatgtacagacatatactcttact
caacgccttccggatagcactaataattcaagttcaggccgtggttatgtccaacctatt
atacattttagtccttcagacacaatgttgctttggaatggagtcctgtgggatacacga
gaagcaaatcctgttcatcagtttgaccagttcacagattattgtggtggtggcttccat
ccagcaggaaacgaggtgatcttgaactcagaggtgtgggatctgaggaagtttaagctt
ttgaggagtgtcccttccctggaccagacagtaataaagtttaatggcactggtgatgtt
atctatgccatcctgaggcgtaatcttgacgacgtaacatcatccatcaatgctcgtagg
gtcagacatcctcttttccctgcattccgcacgattgacgccgtgacttactcggatatt
gcaactgttcaaattgatcgctgtgtccttgatcttgccactgagcccaatgattctctt
atcggagtggttgctttggatgatcaccaggagctgttctcttctgctcgcttgttcgaa
gttggcaggaagcgaataactgatgatgattcagatccggaggatgcaggtgacaccgac
gatgaagatgacgacgacgacaactctgatgatggtcttaggcttgctcctgtgctggaa
ggggaatcagattctgaggatgtaagtaacagcagcgatgatggtggcgatgatgatatc
cccagttcggatgaaatcgaagatgatccagagttcattgatgatggtgaccttgatggg
ggagggggtttgttggatgttatgggtgatgctgaaggggaggacgatgatagtgatatg
atagggtccttcagcagtggcgatgaggatggttggatattgtag
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integrated database retrieval system
