Panicum virgatum (switchgrass): 120681624
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Entry
120681624 CDS
T07260
Name
(RefSeq) pachytene checkpoint protein 2 homolog isoform X1
KO
K22399
pachytene checkpoint protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120681624
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Others
120681624
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_lid_TRIP13_C
AAA
TRIP13_N
AAA_22
AAA_16
AAA_18
nSTAND3
Cytidylate_kin
AAA_14
AAA_5
NPHP3_N
Viral_helicase1
NACHT
AAA_30
AAA_2
AAA_28
RuvB_N
RNA_helicase
DUF815
TIP49
ATPase_2
TsaE
AAA_17
AAA_11
ABC_tran
AAA_24
AAA_33
AAA_7
Rad17
bpMoxR
nSTAND6
IstB_IS21
nSTAND1
AAA_19
AAA_3
PduV-EutP
SLFN-g3_helicase
Cytidylate_kin2
KAP_NTPase
SRPRB
NB-ARC
Sigma54_activat
DnaB_C
Mg_chelatase
SKI
NTPase_1
ResIII
AAA_13
Motif
Other DBs
NCBI-GeneID:
120681624
NCBI-ProteinID:
XP_039819134
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Position
7N:34236816..34242129
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AA seq
478 aa
AA seq
DB search
MSAPMEISFSAPAPPPEAACTVVAAPALEPAAAVSSPPPPQQQQAAPAAAVVAPSPADDK
VLVSVEVLLHATSAARHSDVQAAVERMLEARSLSYVDGPVPIPADNSFLIENVKRIQICD
TDEWVENHKVLLFWQVKPAVHVFQLNEDGPGEEPGEDDTLSSFNEWALPAKEFDGLWESL
LYEVGLKQRLLRYAASALLFTERGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR
FKSRYSMCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAA
ARQAAISGSEPSDSIRVVNALLTQMDKLKSWPNVIILTTSNITTAIDIAFVDRADIKAYV
GPPMLQARYEILRSCMQELLRVGILTYPQGGSVPCILNYSTLKEKKHCPEAPEPHGAFHL
SSLLYEAAELCEGLSGRSLRKLPFLAHASVTNPSCCDASTFMHTLIQTAKREISESRG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccctatggagatctccttctccgcgcccgcaccccctccggaagctgcgtgc
accgtggtggccgccccggcgctggagcctgccgccgcggtctcctcgccgccgccgccg
cagcagcagcaggcggcgccggcggcggccgtggtcgctccttccccggccgacgacaag
gtcctcgtctcagttgaggtactgctgcacgccacgagcgcggctcgccactcggacgtc
caggcggcggtcgagaggatgctagaagctcgaagcttaagctatgttgatgggcctgtg
ccgattcctgctgataattcttttcttattgaaaatgtcaaaaggatccaaatctgtgac
actgatgagtgggttgagaatcataaggttctcttattttggcaagtcaagcctgctgtg
catgtgttccagctgaatgaagatggtcctggtgaggaaccaggtgaggatgatacgctc
tcaagcttcaatgagtgggctttacctgccaaagaattcgatggtctgtgggaaagctta
ctatatgaagttggtctcaagcagaggttgctgagatatgctgccagtgctttgcttttt
actgaaagaggtgtggatccatgtctggtttcgtggaaccggattgtacttttgcatggt
ccacctggaacgggaaagacttccttgtgtaaagcactagcacagaaactttccattcgc
ttcaaatcaaggtattctatgtgtcaattgattgaagtgaatgctcattcattgttcagc
aagtggttttctgaaagtggaaaactggtagccaaacttttccagaagatccaggagatg
gtggaggaagaaagcaacctggtatttgtattgatagatgaagttgaaagccttgctgct
gccagacaggctgccatatctggctctgaaccttcagactccattagagttgtcaatgca
ctgctaacacaaatggacaaactgaagtcttggccaaacgttatcattttgacaacatca
aatatcactacagcaattgatattgcgtttgttgacagggcagacattaaggcttatgtt
ggaccccctatgcttcaagcacgatatgagatcttgaggtcatgcatgcaggaactttta
agagttggtattcttacatatcctcagggtggtagtgtgccatgtattctgaactattcg
accctgaaggagaagaagcactgtcctgaggctccagaaccccatggcgcatttcatctc
tcgagtctactctatgaagccgcagaactgtgcgagggacttagcggccggtcattgcgg
aaactccctttcctggcacatgcctctgtcaccaacccttcatgctgcgatgcttccact
ttcatgcatactttgatacaaactgcgaaaagagagatctcggagtcacgtggttag
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