Panicum virgatum (switchgrass): 120681656
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Entry
120681656 CDS
T07260
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120681656
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120681656
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120681656
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120681656
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120681656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Motif
Other DBs
NCBI-GeneID:
120681656
NCBI-ProteinID:
XP_039819176
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All DBs
Position
7N:38584715..38600599
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AA seq
941 aa
AA seq
DB search
MIKSVVYYGNIPVGEAELWPKGLTDLSWARAIRVDRLSPPSERCPPLAVLHAVAAGARCL
VMESSPTSTADEPPPPLVAMHTACLRDNKTAVFPLGAEEIHLVAMTSKTNLPNHACFWGY
KVPLGLYNSCLSMLNLRCLGIVFDLDETLIIANTTRSFEDRIDALQRKLGIETDPQRISG
MLAEIKRYQDDKSILKQYIESDQVSDGGEVYKVQSEVIPPLADNHQQPMTRPVIRLQEKN
IILTRINPSIRDTSVLVRLRPAWDDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDP
DSKLINSVQLLDRLVCVKSGSKKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQRRVHVV
PAFAPYYAPQAEANFPIPVLCVARNVACNVRGGFFKDFDEGILPRISEVRYEDEMDGIPS
APDVSNYLISEDENAAISNANKDPHAFDGMADVEVEKRMKEASSSFQVVNPITTDVHAMT
VAAKEHSVTPAFSSTPIAPPRGMIPLNNEHVPQPPSFSQLVAQSVLVDPSQGSPAREEGE
VPESELDPDTRRRLLILQHGQDTREAAPPFPAGPPAQVSVPPVQSHGNWFSLEEMNPRNL
NKPSTEFHLESDSVHYDKKQPQHPSYFPVGDNPTSADKYSYKNQRYPQPLHSEDHQVLHN
HAPATYRSFSGEDIVTCHAPSRQRSSQMESGRYFVQYGGITGVLEEIAVKCGFKVEYRST
LCDTAELQFSIEVWIFGEKIGEGIGKTRKEAQCQAADTSLRNLADKFLSWDPDKMTVAKE
NGFNSYPNSHRYPGSNRDDMLPVASTSDESRYMNDRIDNLRKPGGSVAALKELCTVEGYN
LVFLSQPSTDGSAGKEVGAQVEIGGQILGKGVGATWEEAKLQAADEAYGTLKSMLGQLAQ
RQPASPRSFAPNFNKRFKPDFSQTMQRIPSGRYSRDDNRFP
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtccgtggtttattacgggaacatccccgtcggggaggcggagttgtggccc
aagggcctgacggacctgtcatgggcgcgggcgatccgggtggaccgcctgtcgccgccc
agcgagcggtgcccgccgctcgccgtgctgcacgccgtcgcggccggcgcccgttgcctc
gtgatggagtccagtcccacatccacggctgacgagcccccaccgccgctcgtcgccatg
cacaccgcttgcctcagggacaacaagacagcggtttttccacttggagcggaagagata
cacttagtggcgatgacttctaagacgaacttgccaaatcatgcatgtttttggggatat
aaagtaccattgggattatacaactcgtgcttgagcatgttgaatcttcgatgtcttggc
attgtgtttgaccttgatgaaacattaattattgccaataccactcggtcttttgaagac
aggatagatgcacttcaaagaaaattgggtattgagactgatcctcagcgcatcagtggt
atgttggcagagatcaagaggtaccaagatgacaagtctatactaaagcagtatatagaa
agtgatcaggtttctgatggtggcgaagtgtataaagtacaatccgaggtcatcccaccc
ttagctgacaatcatcaacaacctatgacacgcccggttataaggttacaagagaaaaat
attatcttgacacgtataaatccatcgataagagatactagtgtcctggtacggttaaga
ccagcatgggacgaccttcggagctacttaattgcaaggggtcgcaaacgttttgaggtg
tatgtgtgcacaatggctgagagggactatgctttggaaatgtggaggttgctcgatcca
gattcaaaattgataaactctgtccaacttcttgacagacttgtctgtgtcaaatctggg
tcaaaaaaatcattgctaaatgtattccatgatggatcttgtcaccctggaatggccctt
gttattgacgaccgtttgaaagtttgggatgagaaggatcagcgtagagttcacgttgtt
cctgcatttgctccatattacgcccctcaggcagaggcaaacttccctattccagttctt
tgcgttgcccgaaatgttgcatgcaatgttaggggtggtttcttcaaagattttgatgag
ggcatcctaccccggattagtgaggttcgttatgaagatgaaatggatggcatcccttct
gctcccgatgttagcaattatttaatttcagaggatgagaatgctgcaatttcgaatgca
aacaaagatccacatgcttttgatggtatggcagatgtagaggttgagaagaggatgaag
gaagcttcttccagctttcaagttgtgaatccaataacaactgacgtccatgcgatgaca
gtagctgctaaagagcactctgttacacctgcattctcatctaccccaatagcaccacca
cggggcatgattcctttgaataatgagcatgttccccagcctccttcattcagccagcta
gttgctcaatctgttcttgtggatccttcacaaggttctccagctagagaagagggtgag
gttcctgagtctgagttggatcctgacactcggagaaggcttctcatattacagcatggt
caagacacaagagaagctgcaccgccatttcctgctggacctcctgcacaagtctcagta
ccgccagtgcaatctcatggaaattggttttccttagaggagatgaatccaaggaacctg
aacaagccttcaacagagtttcatttagaatccgactctgtacattatgataagaagcaa
ccgcagcatccatcatacttccctgttggggacaatcctacatctgcagataaatatagc
tataagaaccagagatatcctcagccacttcacagtgaagatcatcaagtgcttcataac
catgcaccagcaacatatagatccttttctggcgaggacatagtaacttgtcatgctcct
tcaagacaaagaagcagccaaatggaatcaggaagatacttcgtacaatatggcggaatc
acgggtgtgttggaggagattgcagtaaagtgtggatttaaggtggagtaccgatcaact
ttatgtgatacggcagagttgcaattctccattgaggtttggatttttggagaaaaaata
ggtgaaggaattggaaaaacaaggaaggaagcacagtgtcaagctgctgatacatcctta
agaaatctggcagacaaatttctatcatgggacccagataagatgacagttgcgaaggaa
aatggttttaatagctatccaaactcacacagatatccaggaagcaatagagatgatatg
ttaccagttgcaagcacttcagatgagtctagatatatgaatgacagaattgacaaccta
agaaaacctggtggttctgttgctgctcttaaggagctttgtacggttgaagggtataat
ttagtattcctatcccagccttctacagatggttcagcaggtaaagaagttggtgctcag
gtagaaataggtgggcaaatcctagggaaaggagttggagcaacatgggaggaagctaag
ctgcaggctgctgatgaggcttatggaacattaaaatccatgctcggtcaacttgctcaa
agacagcctgcatctccaaggtcatttgcgcccaattttaataagcgcttcaagccagat
ttctcgcagacaatgcaaaggattccatcaggcagatattctagagacgacaatcgtttt
ccttga
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