Panicum virgatum (switchgrass): 120681792
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Entry
120681792 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120681792
03015 mRNA surveillance pathway
120681792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120681792
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120681792
mRNA cycle factors
P-body specific factors
120681792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
HopA1
Motif
Other DBs
NCBI-GeneID:
120681792
NCBI-ProteinID:
XP_039819332
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All DBs
Position
7N:complement(30598518..30605585)
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AA seq
504 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAITQEAVVDQVDARFAGRYDWACFRPGNGSQKNHRYSRLYLNF
KRPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDGRGGTIVKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMFVRQQRAAKSMAQRPGSRV
SRKVSGVVTGSSNPSKRSSEKRRSSAYVVRDSAKEKPTYIMVPKREEHTQREKAVAGSSD
VTMGGTSGPGQAVEAKRDKIVILKGRGRVDSSIPDAATQQSSTPVKNVPPLSSRQDQRLE
ASGRNIKSILSNKETRSSNTSQHEQEGHMLNTERDKRPPRVLNPRNMVKDQIVENAEKSH
FDEKPNHLHGSAPVGEKIDRHARNRDRPDRGVWAPRRYDKTTSGGGSHASSSEFPQMQSH
PGDNFSQLADGHGDRKADTRSHGGGRGGPVENGHRHANRRGPPRGPKETEISANMPDGKN
TKRSSASYGAHERQVWVQKSSSGS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcaccaaggtggtgctccggcggctgccgccggcgatcacg
caggaggccgtcgtggaccaggtcgacgcgcgcttcgccgggcggtacgactgggcgtgc
tttcgccccggcaatggcagccaaaagaatcataggtattctagactctaccttaatttc
aagcgcccagaggatgttgttgagtttgctgaggtcttcaatggacatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcgcaacaggttcccaag
tcaaatatcaagaaggatggccgtggaggaactatcgtgaaagatccggaatacttagaa
tttcttgagcttatttcaaagcctaccgagcatctgccaagtgctgaaattcagctcgaa
aggaaagaagctgaaagggcagctgctggaaaggaggcacctgttgtgacacctcttatg
atgtttgttcgtcagcaacgggcagctaagagtatggctcagagacctggaagtagagtt
agcagaaaagtttcaggtgttgtaactggcagttccaatccttctaaaaggtcttctgag
aagcgcaggtcctctgcgtatgttgtacgtgacagtgctaaggagaaaccaacttatatc
atggtgccgaagagagaagagcatacacagagggaaaaagctgttgctggaagttcagat
gttacaatggggggaacatctggacctggtcaggctgttgaggctaaaagggacaaaatt
gtcattttgaaaggcagaggaagggttgattctagtatacctgatgctgcaacccagcag
tcatcaacccctgtgaagaatgtgccaccattgagttctagacaagaccagcgactcgag
gccagtggtagaaatattaagagtatactttcaaacaaggaaacccgcagttcaaataca
tctcaacatgaacaggaaggtcacatgcttaacactgagagggataagaggccaccaagg
gttctcaatccacgtaacatggtgaaagatcagatagttgaaaatgctgagaaaagccat
tttgatgagaagcctaatcatcttcatggctctgctcctgttggtgagaagattgacagg
catgctagaaacagagataggcctgatcgtggtgtttgggcccctcgccgctatgacaag
actacatctggaggtggttctcatgcctcatcatcagagttccctcaaatgcagtcacat
cctggagataatttctcgcaactagcagatggtcatggagacagaaaggcagacacaagg
agtcatggtggtggccgtggcggtcctgttgaaaatgggcataggcatgccaaccgtcgt
ggtcctccacgtggtccaaaagaaactgaaatatctgctaacatgcctgatggaaagaat
acaaagaggagctctgctagctatggtgctcatgagagacaagtatgggttcagaagtca
agttcaggctcgtga
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