Panicum virgatum (switchgrass): 120681803
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Entry
120681803 CDS
T07260
Name
(RefSeq) small RNA degrading nuclease 1-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120681803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120681803
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120681803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECM10
Motif
Other DBs
NCBI-GeneID:
120681803
NCBI-ProteinID:
XP_039819347
LinkDB
All DBs
Position
7N:complement(47902501..47906115)
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AA seq
462 aa
AA seq
DB search
MAKRLAAAEKEVLVEVVRFTQKNGLKGSDGGWKDFLARNDKKFGDSVSDPRKRSRDVLLA
FLQTFSKDFQKYFGKLVKRQKERSTVQQYMNDFPDKVSPEQKLVQLTAEHPEYRKNYCFP
SYQEGWKVLRIGEVSSLVSSSAMLAIDCEMVLCDDGMEAVVRVCVVDNNLEVKLDILVNP
SKAITDYRTHITGVSKKDLEGVTSSLVDVQKSLKRILAKGKILIGQSLYRDLCALKMDYC
QVIDTAYIFKYANLPTTASASLNSLCKSVLGYSVREGEPHNCLKDAEAAMNLVLAKLKHG
FNDPIKVAASSVSESDALKLLAHRIPVHLPCQELCKIFSGNPSIDDKIDSRIRGEFYSTS
ISFNEIDELEMAFEALDGQMTKDSGGRLQKYVLMKRDNGDVVSFYVRKMVYGPQPNQFEF
PKKRPQPIEDAEPKKEQVDGDQQKKKRKSKKHVNSAQVSVVE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcggctcgccgccgccgagaaagaggtgctagttgaggtcgtgagattcacc
cagaagaacgggttgaaaggctctgatggggggtggaaggatttcctcgcgcggaacgac
aagaagtttggtgattcagtaagcgaccctaggaagcgttcaagggatgtgctgctcgcc
ttcctgcaaaccttctccaaggatttccaaaaatacttcggcaaattggtgaagcgtcaa
aaggaaagaagtactgttcagcagtatatgaacgattttcctgacaaggtttctcccgag
cagaaacttgttcaactgacagcagagcacccagagtacaggaaaaattattgcttccca
tcataccaggagggatggaaagtattacggataggagaagtctctagtttggtgagctcg
agtgctatgttggcaattgactgcgagatggtcctttgtgatgatggcatggaggctgtg
gtccgagtatgtgttgtagacaacaatcttgaggtgaagctggacatacttgtaaatcct
tctaaagctattactgactatagaacacacatcactggtgtatctaagaaggatttagaa
ggagtcacatcatcgctagttgatgttcagaaatcgctcaagaggatcttggccaaagga
aagattttgatcggccagagcttatatagagatttatgtgccttaaagatggattactgt
caagttattgatacagcatacatctttaagtatgcaaatttacctactacagcatcagct
tccttaaacagtttgtgcaagtctgttttagggtattctgttcgagaaggagaaccacat
aattgcttaaaggatgcagaagctgcaatgaatctagttcttgcaaagcttaagcatgga
tttaatgatcccattaaagttgctgcaagcagtgtatctgaatctgatgcattgaagtta
cttgctcatagaataccagtgcacctgccttgccaagagctgtgcaaaattttctctggg
aaccccagtattgatgacaagattgattcaaggattcgaggtgaattttattcgacaagt
atttcgttcaatgagatagatgagttagagatggcttttgaagcactggatggccaaatg
actaaggactctggtgggcgacttcaaaagtatgtgctgatgaagcgcgacaatggagat
gtggtgagtttctacgtccggaagatggtatatggtccccagccaaaccagttcgagttt
ccaaagaagagaccacagcctattgaggatgcagaaccaaagaaagaacaagttgatggg
gatcagcaaaagaagaaacgaaagagtaagaagcacgtgaactcggcacaggtgtcagtg
gttgaatga
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