Panicum virgatum (switchgrass): 120681808
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Entry
120681808 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 19-like isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120681808
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120681808
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
120681808
NCBI-ProteinID:
XP_039819354
LinkDB
All DBs
Position
7N:41389622..41398599
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AA seq
1065 aa
AA seq
DB search
MPRAFEEISDEEWSLHTFEPSRVLKRSNKPPSQPPPPIDSFRYNPKSSSAAGTSTATVVL
SDDDFDLGADGRSRRAAKSQRGLKRPHHGAPSRAPPSTGSFRHNPKPSKAAAALGLSDSE
DDDFDITNHDFDLPASPSRTSRLRGKGKNQRVLKRPQHRPHSQALPSIGSFRHNPKPSKA
AAITGLSNSEDDDFDLTDHDLDLPVSLSRTSPWRRNAGRRLLTPAIDMSEDELDLPTSPL
RTSGLRRKGKSEHVGKHPQHQPRQLLTPAIDMSEDELDLPTSPLRTSGLRRKGKSQHVGK
HPQHQPHWQAPSIGSFRHNPKPSKAAATTGLSDTDDDDFDLTDHDLDIAAPPSRTSRPRR
AAGRRLLTAAIDISEEDEDLDLADDDFDYQDPRPFQQRPSGRRFVIGDDDDSDVPVAVDV
EDDDEVDWSALENEDEEECNVGRNVHVEEREGDVVGMALRKCSRISADLRQELFGTSARN
IESYAETDASTCRIVTQEDVSAACTSENSGFDPVLKPYQLVGVNFLLLLHRKSIGGAILA
DEMGLGKTVQAVTYLTLLRHLYNDPGPHLIVCPASVLENWERELKKWCPSFSIVMFHGAG
RTAYSKELSSLGKAGCPAPFNVLLVGYTLFERRSAQQKDDRKALKRWRWSCVLMDEAHVL
KDKGSFRWRNLMAVAQHARQRLMLTGTPLQNDLHELWSLLEFMMPDIFATGDVDLKKLLN
AEDRGLISHIKSILGPFILRRLKSDVMQQLVPKIQHVKFVIMDTEQSKAYQNSIDEYRSA
CQARSTKSSVDITNNVVGLIPKRQISNYFTQFRKIANHPLLVRRFYSDKDVDRIARLLYP
KGAFGFECSLEKAIQELKNYNDFDIHQLLISYGDASTKGALTDEHVFASAKCQALAELLP
SLANNGHRVLIFSQWTTMLDILEWALEVIGVTYRRLDGGTPVTERQTIVDTFNNDHSIFA
CLLSTRAGGQGLNLIGADTVIIHDMDFNPQMDRQAEDRCHRIGQQKPVTVYRLVTKGSVD
ENIYEIARRKLVLDAAILQSGAELDNSTDVPEKTMGEILASLLLA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgagccttcgaagagatctccgacgaggagtggtcgcttcacaccttcgagcct
tcgcgcgtcctcaagcgctccaacaagccgccctcgcagcctccgccgccgatcgattca
ttccgctacaaccccaagtcttcctccgccgccggcaccagcactgcaacagtcgtcctc
tccgacgacgacttcgacctaggtgcggacggacggtcgcgccgcgccgcgaagagccag
cgcggcctcaagcgcccgcatcacggggccccttcgcgggcccctccgtcgactggctcc
ttccgccacaatcctaaaccctccaaggccgcggcggccttgggattgtccgacagcgag
gacgacgacttcgacatcacgaaccatgactttgatcttcctgcctcgccttcgaggacg
tcacgcctgcgcggcaaagggaaaaaccaacgcgttctgaagcgtccgcagcaccggccc
cattcgcaggctcttccttcaattggctcgttccgccacaatcccaagccctcaaaggcc
gctgccatcacggggctatctaacagtgaggacgatgacttcgacctcacagaccatgac
ttggaccttccagtttcgctttccaggacatcgccctggcgccggaatgcgggccgccgg
ttgttaactcctgccattgacatgtccgaggatgaattagaccttcctacctcgcctttg
aggacgtcaggcctgcgccgcaaagggaagagcgagcacgtcgggaagcatccgcagcac
cagccccgccagttgttaactcctgccattgacatgtccgaggatgaattagaccttcct
acctcgcctttgaggacgtcaggcctgcgccgcaaagggaagagccagcacgtcgggaag
catccgcagcaccagccccattggcaggctccgtcaattggctcgttccgccacaatccc
aaaccctccaaggctgctgccaccacagggctatctgacactgatgatgatgacttcgac
ctgacagaccatgacttagacattgcagctccaccttccaggacatcgcgtccgcgacgt
gctgctggtcgtcggttgttaactgctgccattgacatctccgaggaagatgaagactta
gaccttgctgatgatgactttgactaccaagacccgaggccttttcagcaacgcccctct
ggtcgacgattcgtgattggggatgatgacgacagtgatgttcctgtagcagtggatgtg
gaggatgatgacgaggtggattggtcggcgctggagaatgaggacgaagaggaatgcaat
gtggggagaaatgtgcatgtggaggagcgtgagggggatgttgtgggaatggcgttgcgc
aagtgctcacgcatctcggcagatctgcgacaggagctttttggtacttcagcacgaaat
attgaaagctacgctgaaacagatgcttctacttgccggattgttactcaggaagatgtg
agtgctgcatgcacaagtgagaattcagggtttgaccctgtgttgaagccgtatcagctc
gtgggagttaatttccttctcttattgcatcggaaaagcattggcggagcaatcctggct
gacgaaatgggtcttgggaagacagtgcaggctgtcacttatcttactttgctgcggcat
ctatataacgacccaggtccacatctcatagtttgcccagcttctgtgttggaaaattgg
gaaagagaactcaagaagtggtgcccttcattttcaatcgtcatgtttcatggagctgga
aggactgcctactcaaaggaattaagctccttaggcaaggcaggctgtccagccccattt
aatgtccttcttgttggctacacactttttgaaagacgaagtgctcaacaaaaggatgat
cgtaaggccctcaaaagatggcgatggagttgtgttttgatggatgaagcacatgttctt
aaagataagggcagcttccgatggagaaacctgatggctgttgcgcaacatgcacgtcaa
aggctaatgctgacaggaactcctcttcaaaatgatttgcatgagctatggtcattgttg
gaatttatgatgcctgacatatttgccactggagatgttgatctgaagaagctgctgaat
gcagaagatcgcggactaatttcacacataaagtccattttagggccctttattcttaga
cgattgaagtcagatgtaatgcagcagcttgttcctaaaatacaacatgttaagtttgtc
atcatggacacagagcagtctaaagcttaccaaaattccatagatgaataccgtagtgct
tgtcaggctcgtagtaccaagtcttcagtcgacattaccaataatgttgttggattgatt
ccaaagcggcaaatatcaaattattttacacagtttcgcaagatagcgaaccatcctttg
cttgtaaggcgtttttatagtgacaaagatgttgatcgaattgcaaggttgctctaccct
aaaggtgcatttggctttgaatgttccttggagaaagcaatccaagagctaaagaactac
aatgattttgatatccaccaactattaatatcatatggtgatgcgagtacaaaaggtgct
ctaacagatgagcatgtttttgcatcagcgaaatgtcaagccttagcagagctattacct
tctctagcaaataatggtcacagagtactcatatttagtcagtggaccacaatgcttgat
attcttgaatgggcactggaagtaataggagttacatatagacgtcttgatggggggaca
cctgtaacagaaaggcaaaccatagtggacactttcaacaatgatcattccatatttgca
tgtttactttctacaagagctggaggccaaggactgaaccttataggagctgacacagtc
attatacatgacatggattttaacccccagatggaccggcaagctgaagaccgctgccat
cgcattggacaacagaaacctgtcactgtctacaggttagtgacaaaaggttcggttgat
gaaaacatatatgagattgcgaggcggaagttggtgctagatgctgcaattcttcaatct
ggagcagagttagataatagcactgatgtaccagagaagacaatgggcgagattttggca
tctcttctcctggcctaa
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