KEGG   Panicum virgatum (switchgrass): 120681817
Entry
120681817         CDS       T07260                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120681817
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120681817
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120681817
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 GTP_EFTU_D4 MMR_HSR1 Zn_ribbon_RanBP G-alpha Zf_2nd_IFT121 Vps36-NZF-N Stc1 zf-Sec23_Sec24
Other DBs
NCBI-GeneID: 120681817
NCBI-ProteinID: XP_039819371
LinkDB
Position
7N:49798697..49805850
AA seq 680 aa
MLDNRSDLEKPITDPGVWQCSICTHENDTSNLSCELCGVLRDLSLYFNNSCEAEAGAKCR
SKYSGVSVLARSLFTTSNTKSKAIIFSDGSQENTNATGNKQATMYDLHKTYMPSKKRHIN
IVPFKFDMPSPDDMVTTGLKSSVNLRKEVQIKDSVDATGKKMMDSGILQTEKDTSMDPST
SAEADKLGGTSSSVPSSNQHVTPILDSELQHLSLESKPKSSKPKNKKPASISEYKPEPWV
LPSEDKEMHRQINLAVVGHVDSGKSTLCGRLLHALGLISKKQMHKYEKEAKEKGKGSFAY
AWAMDDSTDERERGITMTVAVKYFDTEKYHVVLLYSPGHKDFVPNMISGATQADAAVLVV
DASIGSFEAGMGVNGIGQTKEHSQLIRSFGVENLIVAVNKMDMVEYSKDRFNFVKSQLGI
FLRSCGFKDSSITWVPLSAMANENLMTAASDSRLLSWYNGNCLLKSIDLLPPPHRDISRP
LRLPICDVIASITLGQVAVCGKVEAGGIRTGSKVLVMPSGDLATVKTIERDSSSCNLARA
GDNIAVGLQGMDPSHLVSGGVICHPDFPVHVASRLELKILVLEITTPILVGLQFELHIHH
AKVSASLVKILLLLDQKTGKASKKMPRLLTARQAAIVEVKLDKEVCVEEFRALKALGRVF
LRSRGNTVAVGIVTRILDEA
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgttagataacaggtctgatcttgagaagcccattacagatccaggggtgtggcaatgc
tccatttgcactcatgaaaatgatacgagtaatttatcctgtgagctatgcggcgtactt
cgtgatctgtcgctatatttcaataatagctgtgaagctgaagctggagctaagtgcaga
agcaagtattctggagtatccgtactggcaagatctctttttacaacatctaatacaaaa
tcaaaggctattattttctctgatggctcccaagagaatacaaatgcaacagggaataag
caagctaccatgtatgatctgcataagacatacatgcccagcaaaaagcgccacattaac
atagtgcctttcaagtttgatatgccatctcctgatgacatggttactacaggcttaaaa
tcatcagtaaatcttagaaaagaggttcaaattaaagattcagttgatgccactggaaag
aagatgatggatagtggtattcttcaaactgaaaaggatacaagtatggatccaagtaca
tcagctgaggcggataaacttggcggaactagtagcagtgttccttccagtaatcaacat
gtaactcctattttggactctgagctacagcatttgagtttggagagcaagccgaagagc
agtaaacccaagaataagaaaccagcttctatttcagagtacaagccagaaccatgggtg
ctcccgagtgaagataaagaaatgcacagacagataaatcttgccgttgttggtcatgtt
gattctgggaaatcaactttatgtggtcgattactacatgctctgggattgatttcaaaa
aagcaaatgcataaatatgagaaagaagctaaagaaaaggggaaaggatcatttgcatat
gcttgggccatggatgacagcactgatgagagggagcgtggaattacaatgactgtggct
gtgaagtactttgacactgaaaaataccatgtagttttgctctactcccctggtcataaa
gattttgttcctaatatgatatctggtgctacacaagctgatgcagctgtcctagttgtt
gatgcatccataggctcatttgaagcaggcatgggtgttaatgggattggtcagacaaag
gagcactcacaacttattaggagctttggtgttgagaacttgatagttgctgttaataag
atggatatggtagaatattcgaaggaccggtttaattttgtgaaatcgcaacttggtatc
ttccttcgatcttgtgggttcaaagactcttcaatcacctgggttcctctgagtgcaatg
gcaaacgaaaacttaatgactgctgcttcagattctcgtcttttgtcatggtacaatgga
aattgtctgctgaaatccattgacttattgcctcctcctcatcgtgatatttcgaggcca
ctacgccttccaatttgtgatgttattgcatctatcacactggggcaggtggcagtttgt
ggtaaagtcgaggctggtggaatccggactggctctaaggttcttgtcatgccatccgga
gacttggctacagttaaaaccatcgagcgggattcctctagttgcaacttggcaagagcc
ggggacaacattgctgttggtctgcaagggatggaccctagtcaccttgtgtcaggtgga
gttatatgccatccagatttccccgtgcacgttgcttctcgcttggagctgaaaattttg
gttctagaaatcactacgccaatactggttggactccagtttgaactgcacatacatcat
gcgaaggtgtctgcaagcttggttaaaatactgttgttgttggaccagaagaccggcaag
gcctcaaagaaaatgccacgcctgctcaccgcgaggcaggctgctatagttgaagtaaag
ctggacaaggaagtctgcgtggaagagttcagagctctgaaggcccttggtcgagtgttc
ctgcggtctcgtggcaacaccgttgcagtgggcattgtgacccgaattctggacgaggct
tag

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