Panicum virgatum (switchgrass): 120681874
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Entry
120681874 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120681874 isoform X1
KO
K14827
pre-rRNA-processing protein IPI1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120681874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120681874
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
120681874
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ipi1_N
TOR1L1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
120681874
NCBI-ProteinID:
XP_039819455
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All DBs
Position
7N:complement(33421440..33430980)
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AA seq
891 aa
AA seq
DB search
MGRPKGGSAASSSSSKKPKPKPKQRGGVDFKKYKHKVGRKLPPPKNATNTEIKSKTIVLP
EQSMASERAGMAVNKRGLTLRELLQQTAHYNANVRRAALNGIKDIVVKHPTELKLHKVAI
IEKLQERICDTDKVVRESLYNILQSLIFPSLKEDNAISTRSTLFLLMANILNGMTHLSID
IQLMAFRFLELVVLNFPSSFSSYAEQAFNNFVAVLSNDRINLHDRNKLNSVLSGLGHCLS
LVAKTIENDDISNRQVHDLSARELWKCTTDEDNSLGRAFAMPNLLLKLQSLVQILINSVE
VSASELCAKSAIDASSCEALLSALHCLDTICRIFVHEVKKPQLKFSISKTQFGPDWLRNS
LLVHLKNLWGVKCLFHEKGDDKFFIFNLKIAEIFLCLSAWIDSTMFPAEEFCHFVSSLFA
KQAKTLRNKDLMEMYLSPIITCIPDLIFNAPDDSKGHLLEAFTDTFRGCKVDCKLILPYL
DAVGEMLLPEKTGTWFAEDGSGVLGYHDAWIHELPRILLQSIDKAPSVTKVVLKLLLRIG
QYFPTMDCENLRPFIKLFGVESSSGAVELGPFVNLARDCQELATSCLYYFPSLLPDIIRP
LASCCLSDALEPLILFKVVEVLQSTYKAGSLQITEQLNFLLLLMARFRVHPGNPSKVSNW
DTFKSLNRLILTSLSEMGDGSLVLELMWNNLSNAIAQKPSMHNMNGLFRIIVTLDAGTNK
LMNEDAIKLIAGYLVDASLDLSKTIEVGFQHDKTRLFQYFIKPCTIMFDKNDKVLCSTLE
MLKSFITGDDHLLSSLSNLNYPGELSCRVCVVTTILIFLCNDQKLHRNLSFGKLVIKGIL
DYIRHQLDSSGPNVTYEEKQKLRSAFEQLKTKALQLNCWDRSELEGLSITR
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggggagaccgaagggaggatcggcggcctcctcctcctcctcgaagaagccgaagccg
aagccgaagcagcgcggcggcgtcgacttcaagaagtacaagcacaaggtcgggcgcaag
ctgccgccgccgaagaatgccaccaacacggagatcaagtccaaaacgatcgtgctgccg
gagcagagcatggcctcggagagggcgggcatggcggtgaacaagcgtgggctcacgctt
cgggagcttctgcagcagacggcccactataatgccaatgtgcggcgagctgcactgaat
ggaatcaaggacattgttgtcaagcacccaacagagcttaaactgcacaaggttgctata
attgagaagctgcaggaaaggatatgcgacactgacaaggtggtccgtgaatcattatac
aatatactgcagtctctgatcttcccatctttgaaagaggataatgctatatctacgcgg
agtacactgtttctgctgatggctaatattctgaatggaatgacccatctatctattgat
atccagttaatggctttccgatttttggagcttgtggttctcaatttcccatcatccttt
tctagttatgctgaacaggctttcaacaattttgttgcggtactgagcaatgatagaatc
aacctacatgataggaacaaacttaacagtgtccttagtgggcttggacattgcctttct
ttggttgctaaaacgatagaaaatgatgatatatcaaatcgacaggttcatgacctctct
gcaagggaactttggaaatgtaccactgatgaagataactcactaggcagagcatttgca
atgcccaatttattactgaagcttcagagccttgtccaaatactcattaattctgtagag
gtttcagcctcagagctctgtgcgaagtcagctattgatgcatcatcatgtgaagcattg
ttatcagccctccattgtctggatacaatatgtaggatttttgttcatgaagtgaagaaa
cctcagttaaaattttccatatccaagactcagtttgggcctgactggttgagaaattcc
ttattggtacatctaaagaatttatggggcgtgaagtgtttgtttcatgaaaagggagac
gacaaatttttcattttcaatttgaaaattgctgaaatctttctgtgcttgagtgcatgg
atagatagcacaatgtttccagctgaagaattttgccattttgtatcttctctattcgca
aagcaggcaaagacacttcgcaataaggatctcatggaaatgtatttgagccccattata
acttgcataccggatcttatattcaatgccccagatgactcaaaaggacatttattggag
gcatttacagatacatttagaggttgcaaggtggattgcaagctaatcttgccatatttg
gatgcagttggagaaatgctgcttcctgagaaaacaggcacatggtttgctgaagacggt
tcaggcgtgttgggctatcatgacgcatggatacatgagttaccccgaattttgctgcaa
tcaattgataaagccccctcagttacaaaggttgttttgaagcttcttctaagaattgga
caatacttccccacaatggactgtgaaaacctgcgtcccttcataaagttatttggtgtt
gaatcatcatcaggagctgtggagcttggcccttttgttaacctagctcgtgattgccaa
gaacttgccacttcatgcctttattactttcccagtctgctccctgacataatcagacca
ttggcctcatgttgcttaagtgatgcactggaacccctcatactgttcaaggtcgttgag
gtcctacagtcaacgtacaaggctggtagtttacagataacagagcaactcaatttcttg
ttgctactaatggcaagattcagagttcatcctggtaatcctagtaaggtctcaaattgg
gacactttcaagtcgttgaatcgtctaattttaacttccctatctgaaatgggtgatggc
tcgctggtcctcgaattgatgtggaataatttatctaatgcgattgctcaaaaaccatcg
atgcataacatgaacggcttgtttagaattattgttacacttgatgcaggaactaataag
ctcatgaatgaagatgccataaagcttatagctggctacttggttgatgcttctttggat
ctgtctaaaaccattgaagttggttttcaacacgataagacaagattatttcagtacttt
atcaaaccctgcactatcatgtttgacaagaatgacaaggttctttgcagcacattggag
atgcttaagtcttttataacaggagatgatcatctgctttcatctctctccaacttgaac
tacccaggagagctatcatgtcgagtttgtgttgtcacaaccatactcattttcttatgc
aatgaccagaaactccataggaatctttcttttggcaaattagttattaaaggcatcctg
gattatataaggcatcagctggattctagtgggcctaatgtgacatatgaagaaaaacag
aagttaagatctgctttcgaacaactgaagaccaaagcattgcagttgaactgctgggat
agaagtgagctggaagggctttcaatcacaagataa
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