KEGG   Panicum virgatum (switchgrass): 120681924
Entry
120681924         CDS       T07260                                 
Name
(RefSeq) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pvir03016]
    120681924
Enzymes [BR:pvir01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     120681924
Transfer RNA biogenesis [BR:pvir03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    120681924
SSDB
Motif
Pfam: Dus zf-CCCH_DUS3L zf-CCCH_4 zf_CCCH_4 zf-CCCH DEAD_2 zf-CCCH_2
Other DBs
NCBI-GeneID: 120681924
NCBI-ProteinID: XP_039819542
LinkDB
Position
7N:complement(7668369..7681058)
AA seq 683 aa
MAATAPAADPTDSSPAVTTDSPPPPRPSPEELVARAVAPVKPAFLRPPPIREVPKEEGKA
GGGGAVVTGEKKSKRQLKRERQQEQKSASHLCIEVGKSGNVDSCKYGTSCRFSHDINAYL
AQKPGDLEGTCPFTMLGQLCPYGLTCRFLGTHKDNLAPQNHSEGNHERNPLSKDIQKLLW
KNKYKFPKASAQIKLLGLKDGNKNKAKAANDDNPDEACELNDDDKTESLSCIPVNVEPDP
TLCKEINNSEGEPLVVSSVQCVEPRPLKKSKVEVDETLNDGTGIHDNGAESEDLNLINGI
KVSSNNQSSCRVDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGE
MAMCTNLLQGQASEWALLRRHPSEDLFGVQICGPYPDTVARTVELVDNECSVDFIDINMG
CPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIY
DWGASAITIHGRSRQQRYSKLADWDYIYQCAQKAPDNLHVIGNGDVFSFTDWNKHISDCS
KISTCMIARGALIKPWLFTEIKEQRHWDITSGERLNILKDFVHFGLEHWGSDSKGVETTR
HFLLEWLSYTCRYIPVGLLDIIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLG
KVPEGFTFAPKHKSNAYDRAENG
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggccgcgacggcgccggccgccgaccctacggactcctccccggccgtcactaccgac
tctccccctcctccgcggccctccccggaggagctggtggcccgcgccgtcgcccccgtc
aagcccgccttcctccgcccgccgcccatccgcgaggtccccaaggaggagggtaaggcc
ggcggcggcggggccgtcgtcacgggagagaagaagtccaagcgccagctcaaacgcgag
cgccagcaggaacaaaagtctgcttctcatctttgtattgaagtagggaaaagtggaaat
gtggactcatgcaaatacggtacttcttgccgtttcagccatgacatcaatgcttatctg
gctcagaaaccaggtgaccttgaaggaacatgcccatttaccatgttggggcagttgtgc
ccatatggattaacttgtcggttccttggtacacataaggataaccttgctcctcaaaat
cattcagaggggaaccatgagagaaatcctttgagcaaagatattcagaagctcttatgg
aagaacaaatataaatttcccaaggctagtgcccagatcaagcttctcggtcttaaggat
ggaaacaagaataaagctaaagcagcaaatgatgataatccagatgaagcatgtgagcta
aatgacgatgacaaaactgaatctctttcttgcattcccgtgaatgttgaacctgatccc
actttgtgcaaagaaataaataattcagagggagaacctttggttgttagctcagttcaa
tgtgtggagccaaggccattaaagaaatcaaaggttgaagttgatgaaactctgaatgat
gggactggtattcatgacaatggggcagaatctgaagatcttaatttaatcaatggaata
aaagtttcctcaaataaccaaagttcctgcagagttgacctcatcacaacacctcattta
cgtgaaaagaaaattatagattttcgagagaagctttaccttgctcccttgacaactgtc
gggaaccttccttttcggaggctctgtaaaaccttgggagctgatattacttgtggagaa
atggcgatgtgcacaaatcttttacaggggcaagcttcagagtgggctttgctacgacgg
catccatcagaggatttgtttggggtgcaaatctgtggaccgtatccagatacagtagca
cgaacggttgaacttgtggataatgaatgttcagttgacttcatagacataaatatgggc
tgcccaattgatatagttgtcaacaagggtgctggatcatcattgctcacaaaacctatg
aggattaaaagtattgtacaagcggcttctactgttactgaaaaaccgttaactgttaag
gtaagaacagctttctttgagggcaggaatcgtgctgattctatagtttcagacatatac
gactggggcgcttcagccataacaatacatggtcgatcacggcaacaacgctacagcaaa
cttgccgattgggactatatttaccagtgtgcacagaaggcccctgataatttgcatgtc
attggaaatggtgatgtattctcctttactgactggaacaagcatatttcggactgctcc
aaaatttccacttgcatgattgctcgaggtgctcttatcaagccttggttatttactgag
ataaaagaacaaaggcattgggacattacatctggtgagagattaaatatccttaaagat
tttgtgcattttggtctagaacattggggctctgattccaaaggtgtggagacaacacgc
catttcttgctagaatggttaagttacacctgccgctacattccggttggtctgctggat
atcatccctcaacgattgaactggaggccaccaagctactatggccgggatgaccttgaa
accctgatggcatctgattcagcagctgactggataaggatatctgagatgttgcttggt
aaagttccggaaggatttacctttgcaccgaagcacaagtctaatgcctatgatcgggcc
gaaaatggctaa

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