Panicum virgatum (switchgrass): 120682014
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Entry
120682014 CDS
T07260
Name
(RefSeq) protein transport protein Sec24-like At3g07100
KO
K14007
protein transport protein SEC24
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120682014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120682014
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120682014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
HVO_2753_ZBP
Motif
Other DBs
NCBI-GeneID:
120682014
NCBI-ProteinID:
XP_039819666
LinkDB
All DBs
Position
7N:6502269..6510310
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AA seq
1013 aa
AA seq
DB search
MQPPMGNERPPPPGRPVSAFVPGAAVPPPPFAAGGPFVPPPRQGALLPQPGAAAPPFGAA
QPAAMGGYRGPPPSQVPFAAAPPPQRPFTSAPLPQGPFTSAPPSQGPFASTPPPQGPFTS
ARPSQGPFTLAPPSQAPFAAGPPPQGPFAASAPAPFRPPPSSSLGQPQSPTGGSLPALNY
VRPPPLQSQGFYPGAQPVNHQFPMSRPAFQQPVHTMPPPPMGLTASFGNQAAYPSAGPPV
GGTLQSLVEDFQSLALSSAPGSLDPGVDVKALPRPLDGDEEPVKLLEAYPLNCHPRYFRL
TTHAIPASQSLVSRWHLPLGAVVHPLAESPNGEEVPVINFGSAGVIRCRRCRTYINPYAT
FADAGRKWRCNLCTLLNDVPGEYFCALDASGRRYDTDQRPELSKGTVEFVAPTEYMVRPP
MPPSYFFLIDVSVSAVRSGLLEVVAKTIKSCLDELPGFPRTQIGFLTFDSTLHFHNFKSS
LSQPQMMVVADLDDVFLPLPDDLLVNLVDSRHVVESFLDSLPNMFHDNVNVESALGPALK
AAFMVMSQIGGKLLVFQSTLPSLSIGRLRLRGDDVRAYGTDKEHTLRVPEDPFYKQMAAE
FTKNQIAVDIFSFSEKYSDIASLGSLAKYTGGQVYHYPSFQAATHGDKLKHELSRDLTRE
TAWESVMRIRCGKGVRFTTYHGHFMLRSTDLLALPAVDSDKAFGMQLSLEETLMTTQTVY
FQVALLYTSSSGERRIRVHTAAAPVVTDLSEMYRQADTGAIVSLLGRIAVENSLSDKLDS
VRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIFPESLRFLPLYILAICKSLALRGGYADVS
LDERCAAGFSMMILPVKRLLNFVYPSLYRVDEVLTMEPNKIDTSLKRLPLTMQCLHTGGL
YLLDDGFNFIVWLGRMLPPELVSNILGVSLANFPDLSKIQLRECDNEFSRNFMKILKNLR
EKDPSYQQLCRVVRQGEQPREGFLMLSNLVEDQMAATSSYVDWIQQIHRQTQS
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcctatggggaacgagaggccgccgccgccaggccgccctgtctcagctttc
gtgcccggcgccgccgtcccgcctccaccttttgccgccggtggtccgttcgtcccgccg
ccacggcagggagcgctgctgcctcagcctggtgctgcggcaccccctttcggggcagcg
caacccgcggcaatgggtggctacaggggtccaccgccgtcccaggttccctttgctgcc
gcgccaccgcctcagcggcctttcacctccgcaccgctgcctcagggccctttcacctcc
gcgccgccatctcagggaccctttgcctctactccaccgcctcagggccccttcacctcg
gctcgaccatctcagggccccttcaccttggctccaccgtcacaggcccccttcgctgct
ggaccaccgcctcagggcccctttgctgcttctgcaccggcaccttttcggcccccacca
tcgtcgtcccttgggcagccacaatctcccacaggaggttctttgcctgcactgaattat
gtgaggccaccaccactacagtcgcaagggttttaccctggtgcacagcctgtgaaccac
caattcccaatgtcaaggccagcatttcaacagccagtgcataccatgccacccccgccg
atgggactgactgcctcgtttggtaaccaggcagcatatccgagtgctgggcctccagtt
ggaggcacactacagagcttagtggaggacttccagtcgttagcactgagttcagcgcca
gggtcgcttgaccctggcgttgatgtaaaagcgctgccaaggccattggatggtgatgag
gagccagttaagcttttggaggcatacccattgaattgccacccgaggtacttccggcta
acaacccatgcgattccggcatctcagtcattggtctccaggtggcatttgccccttggg
gctgtggtacaccctcttgcagaatcacctaatggggaggaagtgccagttatcaatttt
gggtcagcaggtgtcatccgttgtcgaagatgcaggacatatataaatccttatgcaaca
tttgcagatgctggaaggaaatggcgctgcaatctttgcaccttgctcaatgatgttcct
ggagagtacttttgtgctctggatgctagtggcagaaggtatgatactgatcaaagacct
gaactctctaagggaacagtagagtttgttgctccgacagaatatatggtgcggccacca
atgccaccttcctatttctttcttattgatgtgtcagtatctgcagttcgaagtggattg
cttgaggttgttgcaaagacaatcaaatcatgccttgatgaacttccaggctttccgcga
acacagataggattcttaaccttcgacagcaccttgcattttcataacttcaagtcttct
ttgtcacagcctcaaatgatggttgttgctgatttggatgatgttttcctgccattgcct
gatgacctcttggttaatttggttgactccagacatgtagtcgagtcatttctcgatagc
ttgccaaatatgttccatgacaacgtaaatgttgagtctgctcttggtccagcacttaaa
gcagcattcatggttatgagtcaaattggggggaagttgcttgtcttccagagtacattg
ccatctcttagtattggtcgtttgagacttcggggagatgatgtacgtgcatatggaacg
gataaggagcatactctgagggtaccagaagatcccttctacaaacaaatggctgctgag
ttcacgaaaaatcagattgcagtggacatattctctttcagcgagaagtactctgatata
gcttccttaggatctttggcaaaatatactggtggtcaggtgtaccattatccatcattc
caggcagctacacatggggacaaacttaaacatgagcttagtagagaccttacacgagag
actgcctgggaatctgttatgcgtatcagatgcggaaaaggggtacggttcacaacatat
catggtcatttcatgctaagatcgacagacctgttagcccttccagccgttgactctgat
aaagcttttggaatgcaactatctctagaggagaccttaatgaccacccagactgtatac
tttcaagtggcactgctatacacatcttcctccggtgaaaggcgtatcagggtccacaca
gcagctgcacctgtggtcacagatcttagtgaaatgtatcgtcaagcagatactggtgcc
attgtctcattgttgggtagaattgcggttgaaaattctctgtctgataagctggacagt
gtccgacagcaattacagttaaagcttgtgagaagtttgaaggaataccgaaacttatat
gttgtacaacaccggataggagggagactgatttttccagaatctctaagatttttgcca
ttatacatcctggccatctgcaaatctcttgccctccgtggaggttacgcagatgtctct
cttgatgaaagatgtgctgctggtttcagcatgatgatactgcctgtaaaaaggctgctc
aactttgtctatccttcgctgtacagagttgatgaagtattaacaatggaaccaaacaag
attgatacttcattgaagcggttgccattaacaatgcagtgtttacatacaggaggtttg
tacctccttgatgatggcttcaattttattgtgtggttaggtaggatgctcccacctgaa
cttgtgagcaacattcttggagtcagcttggcaaacttccctgatctatcaaagattcag
ttgagagaatgtgacaatgagttctcgagaaatttcatgaaaatactaaaaaacctgcgg
gaaaaggatccttcttatcagcagctatgccgagtggtgcgacagggtgaacagccaaga
gaaggctttctgatgctatctaaccttgttgaggaccagatggctgcaacaagcagctat
gtggattggatacaacaaattcaccgtcaaacacaaagctaa
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