Panicum virgatum (switchgrass): 120682141
Help
Entry
120682141 CDS
T07260
Name
(RefSeq) ribosome biogenesis protein BOP1 homolog isoform X1
KO
K14824
ribosome biogenesis protein ERB1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120682141
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120682141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BOP1NT
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_Vps41
ANAPC4_WD40
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
Beta-prop_Nup120_160
Beta-prop_IP5PC_F
DUF2441
VPS11_N
Beta-prop_DCAF4
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
120682141
NCBI-ProteinID:
XP_039819829
LinkDB
All DBs
Position
7N:complement(24432428..24440884)
Genome browser
AA seq
681 aa
AA seq
DB search
MGHSDGEHELEGDDLSADDSSWSDGVWSEDDDEESLSFEDSGEGSGSDADSDEAAAAEES
DSSEDEVAPRNTVGDVPLEWYKDEEHIGYDIDGRKIKKRDREGQIEAYLKNADDAKNWRK
IYDEYNDEEVQITKEEAKIISRLLKGKTPHANVDPYPDYVDWFEYEDKGHPLSSAPEPKR
RFVPSKWEQKKVVKLVRAIRNGWIKLDKPKEESNLYLLWGDETDTADNKRQGLSYIPAPK
PNLPGHEESYNPSVEYIPTQEEIDSYQLMYEEDRPKFIPKRFESLRSVPAYEKALREGFD
RCLDLYLCPRTRKKRINIDPESLKPKLPSKKDLRPYPKTCYLEFKGHTSPVTSISVETTG
QWLASGSRDGTIRVWEVETGRCLKVWNVGGDVRHIAWNPSPDRPILAAIVGHDLLLINAE
VGSEEVQMRAKELLKIGEMVPQDDTDGKKPTVRWMRHEKLDGITLIHHKAVSNVDWHFKG
DYFTTVVPSGDTRAVLLHQLTKKNSHHPFRKLPGLPVAATFHPSQKMFFVATKKFVRVYD
LQKAELVKKLESGLREISSISIHPGGDNVIVGSKDGKLCWFDTDLSTRPYKTLKIHSKDI
TNVTFHRKYPLFASSSEDCTTYVCHGMVYSDLNQNPLIVPLEILRGHSTLDGRGVLDCKF
HPKQPWLFTAGADSVIRLYCD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggccacagcgacggcgagcacgagctcgagggcgacgacctctccgccgacgactct
tcgtggagcgacggcgtctggtccgaggacgacgatgaggagtcgctgtcgttcgaggac
agcggcgagggctccggctccgacgccgattctgacgaggcagcggctgcggaagagagc
gactcttcggaggatgaggtggcgccaaggaacaccgtgggggacgtgcctctggagtgg
tacaaggacgaagagcacattgggtatgacatcgacgggaggaagatcaagaagcgcgat
agggaggggcaaattgaagcctacctcaaaaacgcggacgatgccaagaattggagaaag
atctatgatgagtataatgacgaggaggttcagattacaaaggaagaggctaagataatt
agtagattgctaaagggaaagactccacatgccaatgttgatccatatccagattatgtt
gattggtttgaatacgaggataaaggtcatccactttctagtgcccctgaaccaaagagg
cgatttgtgccttcaaagtgggagcagaagaaggttgttaaacttgtgagagccattcgt
aatggatggataaagttggacaagccaaaggaggaatctaacttatatcttttatgggga
gatgaaactgatacagcagacaataagcggcaaggcttgagctacattcccgctcctaaa
cctaatttaccaggtcatgaagagtcatataatccttctgttgaatacattccgacacaa
gaggaaatagattcataccagcttatgtatgaggaggatcgtccaaagttcattccgaaa
cgatttgagtctcttcgaagtgtacctgcatatgagaaggcactaagggaaggttttgat
cggtgtctggatctttatctatgccctagaacccgcaaaaagcgtataaatattgatcct
gagtcactcaagcccaagttaccaagtaaaaaggatttgaggccatacccaaaaacttgt
taccttgagttcaagggccatacgagtcctgtgacgtccatttcagttgaaacaacaggg
cagtggctcgcatctggttctcgagatggtacaattcgtgtttgggaggttgaaactggt
cgctgtcttaaagtttggaatgtcggcggtgatgtccgtcatattgcctggaatccttca
cctgacaggcctattcttgctgctattgttggacatgatctgctacttattaatgctgag
gtggggagtgaagaagtgcaaatgagggcaaaagagctcctgaagattggtgaaatggtt
cctcaagatgatactgatggtaagaaaccaactgtgaggtggatgaggcatgaaaaactt
gatggaatcaccttgattcatcataaggctgtgtcaaatgtggactggcattttaaggga
gattacttcaccacagttgtgccaagtggtgatacaagagctgtattgctgcatcagctc
acaaaaaagaactcgcaccatcctttccgtaaactgccaggccttcctgttgcggcaaca
ttccatccaagtcagaagatgttctttgttgctactaagaagtttgttcgggtttatgat
ctccagaaggcagaattggtaaagaagctggagtcaggtctccgtgagatttcctccatc
tcaatccatcctggtggtgataatgttattgtgggaagcaaagatggcaaactatgctgg
tttgatactgatctatctacaagaccatacaagactctaaagatccactcaaaggatatt
accaatgttacttttcaccgaaagtaccctctttttgcctcatcctctgaggattgtact
acctatgtatgtcatggaatggtctattctgatcttaatcagaacccacttattgtacca
ttggaaattcttcgcggtcattctactttggatggaagaggggttctggactgcaagttc
catccgaaacaaccttggttgttcactgcaggtgctgactctgtgattcgactgtactgt
gactaa
DBGET
integrated database retrieval system
