Panicum virgatum (switchgrass): 120682179
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Entry
120682179 CDS
T07260
Name
(RefSeq) autophagy-related protein 13a-like isoform X1
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120682179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120682179
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120682179
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120682179
Atg1 complex
120682179
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120682179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
120682179
NCBI-ProteinID:
XP_039819895
LinkDB
All DBs
Position
7N:complement(39256092..39260322)
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AA seq
499 aa
AA seq
DB search
MSGMSDSAGGGRAGAELMVEQFHLKVLHAVLAVRTPRPLAAAAAPAAASAFRRRDRWFHL
PLHDPPPSPEAADRLEPLAPGEPLVVDVLLSPAGGGAGPGGEVVERWTVACEPWPPDAAG
GEEVAVNRAYKHCFTLLRSVYAVLRVLPAYRVFRLLCANHSYNYEMVHRVDTFAEPFSRA
QEAAMRSHRFVPVETQLGRLVVSVQYLPSLTSFNLEITSLSPSNIIPDYVGSPAAEPMRA
FPASLTEATGSAFPSSYQLQRPHSWAPPVFWPHTPAQQVFYASPTPSPPHFPGGYLQKRL
TRGESAPMPIPQVGERRSPVHRQNTLPPPSPRKGDMGAAGAQESPSEIGRLIGRLSPRHK
GKDNKDESGRFSALSSCDSPRQDDLDDYPFFVDDVDPPVSKPGSSDGKETSDQACSLSHK
SQDAQVGSLVNLLRNACPLRDPSYSLQTSRAEPSEAASASSATSRRTSDALEELQSFKEI
RERLQSRSSAKHQEPPGKP
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggatgtccgactccgcggggggcggacgcgccggcgcggagctgatggtcgag
cagttccacctcaaggtgctccacgccgtcctcgccgtgcgcacgccgcgcccgctcgcc
gccgccgcggcgccggcggcggcctcggcgttccggcggagggacaggtggttccacctc
ccgctgcacgacccgccgccgtcgcccgaggcggccgaccgcctggagccgctggccccc
ggggagccgctcgtggtggacgtcctgctgtcccccgccggcggtggagcgggaccggga
ggggaggtggtggagaggtggacggtggcgtgcgagccctggccgccggacgccgcgggc
ggcgaggaggtggccgtgaaccgggcgtacaagcactgcttcacgctgctcaggtcggtg
tacgccgtgctccgcgtcctcccggcgtaccgcgtcttccgcctcctctgcgccaaccac
tcctacaactacgagatggtccaccgcgtcgacaccttcgccgagcccttctcgcgcgcc
caggaggccgccatgcgctcccaccgcttcgtccccgtcgagacccagctcggccgcctc
gtcgtctccgtccagtacctccccagccttacctccttcaacctcgagatcacctccctt
tctccctccaacataatccccgactacgtcggcagcccagccgccgagcccatgcgcgcc
ttcccagcctcgcttaccgaagccaccggctccgccttcccctcgtcctatcagctgcag
cgcccgcacagctgggctccgcctgtgttctggccgcacacgccggcacaacaggtgttt
tacgcctcgcccacgccctcgccgccccactttccaggtgggtacctgcagaagcgtctc
actaggggggaatcagcgccaatgccaataccacaggtgggtgagaggaggagccctgtg
caccgccagaacacgctgccaccgccatctccgagaaaaggagacatgggggcagcaggt
gctcaagagtctccgtcagagatcggccggttgatagggaggttgtcacccagacataag
ggcaaggacaacaaagatgaatctggcaggttctctgcactctcctcatgtgattcccct
cggcaagacgatctggatgattatccttttttcgtggatgatgttgatcccccagtctcc
aaacctggaagcagtgatgggaaggaaacaagcgatcaggcatgttcgttgtcccataaa
tctcaagatgcacaagttggttctctagtcaacctgctgagaaacgcgtgtccgttgcga
gatcctagctattcattacaaacatcaagggctgagcccagcgaagcagcctcagcaagc
tccgccacgtcccgtaggacatctgatgcacttgaggagctccagtccttcaaagagata
agggagcgactgcagtccaggagcagtgcaaaacatcaagaaccaccagggaaaccatag
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