Panicum virgatum (switchgrass): 120682363
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Entry
120682363 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT1-like isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120682363
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120682363
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120682363
NCBI-ProteinID:
XP_039820153
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Position
7N:44865935..44871906
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AA seq
482 aa
AA seq
DB search
MEGQKKRRYLNHLGQWEEYPSVASAEGLNAAYPVMYGAYSPLPSFGDNQSYFSLLYSFSS
PYYQPPASPSMGYSSSATGISQFDPLRQYYLPDELYYSPTPGFHQPFGSLDGVPMHSNGI
PQFFGQGNVSLNSGMHQGSMYNSGSYAALEQGGKCGGGRPCCSASSRFDTFNKGFKHEKD
SLDFLYEQSRGPRATKTKKEVESSSVEDKNKKALLIVDPEKYNHPDFVTEYKDAKFFVIK
SYTEDHIHKSIKYNVWASTATGNRKLNAAYREAKDKEEYCPIFLFFSVNGSGQFCGVAEM
IGPVDFDMSVDYWQNDRWSGQFPVKWHIVKDVPNNLVRHIILGNNEDKRVTNSRDTQEVK
LEQGVQMLAIFKNHDAKTTILEDFDFYEQQEKAMLDNRQQLKVQYAHAKTQKLVEASEAV
GIMTQISDTFAQAVHLEETKDKEISLKIEDTTSAEKASAAPVKTEEATPKTAESGNLLKG
SG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggaagggcagaaaaaacgtagatatttaaaccatttgggtcaatgggaagaatatcca
tctgttgcgagtgcggagggtcttaatgctgcataccctgtgatgtatggagcttattcc
cctctgccaagctttggagacaaccagtcatatttctcattgctctactccttctcaagt
ccttactaccagccacctgcttctccaagcatgggatattcaagttcagctactgggata
tcacagtttgatcctttgcgccagtactaccttcctgatgagctttactactcaccaact
cctggcttccatcagccttttggttctttggatggagttccaatgcattctaatggtatt
cctcaattttttgggcaaggaaatgtatccctgaattctggaatgcaccagggttccatg
tataactctggatcatacgctgcattagaacaaggtggtaaatgtggaggtggtagacca
tgttgcagtgctagtagcagatttgacaccttcaacaaaggcttcaagcatgagaaggac
tctcttgactttctgtacgagcaaagtcgtggcccaagagccaccaaaacaaagaaagaa
gtggagagctcttcagttgaggataaaaataaaaaggcattattaatagttgatcctgag
aagtacaaccaccctgatttcgtcactgagtacaaggatgccaaattctttgtaataaag
tcctacactgaagatcacattcacaaaagcataaagtataatgtttgggccagcactgcc
acagggaacagaaagctaaatgctgcttatcgtgaggcaaaagacaaagaagagtattgt
cctattttcttgtttttctcggttaatggcagtggtcagttctgtggtgtagctgagatg
attggacctgtcgactttgacatgagcgtcgattactggcagaatgacagatggagtggc
cagttccctgtgaaatggcacattgttaaggatgtaccaaacaaccttgttcggcacatc
atcctggggaacaatgaggacaagcgtgtgacaaacagcagggacacacaggaggtaaaa
ctagagcaaggtgtccaaatgttggccatcttcaagaaccatgatgccaagacaaccatc
cttgaggatttcgacttctatgagcaacaagagaaggctatgttggataataggcagcag
cttaaggtacaatatgctcatgccaagacccagaagcttgtggaggccagtgaagcggta
ggcatcatgactcaaatctcagacacctttgcacaggctgtccatctagaagaaaccaag
gacaaagaaatcagtctgaagattgaagataccacatctgctgagaaggcatccgctgct
cctgtgaagactgaagaagccactccaaaaacggcagaatctggtaaccttttgaaggga
agcggttga
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