Panicum virgatum (switchgrass): 120682405
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Entry
120682405 CDS
T07260
Name
(RefSeq) transcription factor HY5-like
KO
K16241
transcription factor HY5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120682405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120682405
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic leucine zipper (bZIP)
Plant bZIP factors
120682405
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bZIP_1
bZIP_2
GIT_CC
bZIP_Maf
GAS
WHD_MCM2
TSC22
FmiP_Thoc5
Aminopep
CENPH
SRC-1
LMBR1
Motif
Other DBs
NCBI-GeneID:
120682405
NCBI-ProteinID:
XP_039820268
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Position
1K:complement(8912952..8915898)
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AA seq
169 aa
AA seq
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MQEQAASSRPSRSSSERSSSSAHHIDMEVKEGMESDEEIRRVPELGLELPGGASTSGREA
GAGAGGPERAQSSTAQASSRRRVRSPADKEHKRLKRLLRNRVSAQQARERKKAYLTDLEV
KVKDLEKNNSEMEEKLSTLQNENQMLRQILKNTTVSRRGPGSTAGGEGQ
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagcaggcggcgagctcgcggccgtccaggtccagcagcgagaggtcctccagc
tccgcgcaccacatcgacatggaggtcaaggaagggatggagagcgacgaggagataagg
agagtgccggagctgggcctggagctccccggcggcgcttccacgtcggggagggaggcc
ggagctggcgccggcggcccggagcgcgcccagtcgtccacggcgcaggccagctcgcgc
cgccgcgtgcgcagccccgccgacaaggagcacaagcgcctcaaaagattactgaggaac
cgggtgtcagcccaacaggcaagagagaggaagaaggcttatctgactgacctagaggtg
aaggtaaaggacctggagaagaataactcagagatggaagagaagctctccaccctccag
aatgagaaccagatgctccgacagatactgaagaacaccactgtaagcagaagaggccca
ggcagcactgctggtggagagggccaatag
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integrated database retrieval system