Panicum virgatum (switchgrass): 120682455
Help
Entry
120682455 CDS
T07260
Name
(RefSeq) homeobox-leucine zipper protein ROC4-like
KO
K09338
homeobox-leucine zipper protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120682455
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
120682455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
120682455
NCBI-ProteinID:
XP_039820312
LinkDB
All DBs
Position
7N:complement(41738329..41743481)
Genome browser
AA seq
767 aa
AA seq
DB search
MRACFVADWLQDDAGRRRDGSGERAGSVARGGGGGNAKDAPEGEDDSRSPMSGHLDVVLA
GGGEDDEDGNPRKRKKRYHRHTPHQIHQLEATFKEWPHPDEKQRADLSKRLGLEPRQVKF
WFQNRRTQMKNQMERHENTMLKLENDKLRAENLSIREAMRDAACSGCGGPALLGEMSLEE
HHLRLENARLRDELTRVCALTAKFIAKPLSPMALPPVQQPHPMPVSSLDLAVTCVGSMPP
STMPVSTISELAGSVSSQMGTVITPAVTTPLVMGSGDKSMFVQLAMRAMDELVKMAQMNE
PLWIPSVSSPGSSTVETLNWKEYSKTFLPCVGVKPIGFVSEASRESGIVNIDSAALVEFF
MNERRWSDMFSCIVAKASTIEEISAGVAGSRDGALLLMQAELQVLSPLVPRREVTFLRFC
NQLAEGVWAVVDVSVDGLEKDQCLVTSMNCRRLPSGCVVQETPNGCKVTWVEHTEYHEAS
VHQLYRPLLRSGLALGAGRWLATLQRQCEGLAILMSSVAMPEHDSSAVALGGKRSLLKLA
QRMMENFCAGVSASSAEWNKLDGLTGCMRKDVRVMVRKSVDEPGVPPGVVLSAATAVWMP
VTPERLFNFLRNEGLRAEWDILSNGGPMQQMLRIAKGQLDGNSVTLLRADPTNTHLNSIL
ILQETCTDKSGAMVVYAPVDFPAMQLVMGGGDSTYVALLPSGFAILPGGSSAGGVGHKTS
GSLLTVAFQILVNSQPTAKLTLESVDTVYSLISCSIEKIKASLHCEV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgtgtttcgtggctgattggttgcaggacgacgccgggcgccgccgcgacggc
agcggtgagcgggcgggttcggtggcccgaggcggcggcggcgggaacgcgaaggacgcg
ccggagggggaggatgacagccggtcgccgatgagcggccacctcgacgtcgtcctggcc
ggcggcggagaggacgacgaggacgggaacccgcgcaagcgcaagaagcggtaccaccgc
cacacgccgcaccagatccaccagctcgaagcgacgttcaaggaatggccccatccggac
gagaagcagcgcgccgacctgagcaagcgcctcggcctggagccgcggcaggtcaagttc
tggtttcagaaccggcgcacgcagatgaaaaatcaaatggagcggcacgagaacacgatg
ctgaagctggagaatgacaagctgcgcgccgagaacctgtccatccgggaggccatgagg
gacgcggcgtgcagcggctgcggcggcccagcgttgctcggggaaatgtcactggaggag
caccacctgcgcctcgagaacgcgaggctcagggacgagctcacccgagtctgcgccctc
acggccaagttcatcgccaagcccctttctcccatggcgctgccgcccgtgcagcagccg
catcccatgccagtctcttcactggaccttgccgtcacttgtgttggctccatgccacca
agcacgatgcctgtctcgacgatctccgagcttgctggcagcgtgtcaagccaaatgggc
acggttatcacgccagcggtgactacgccattggtgatgggtagcggtgacaagtccatg
ttcgttcagcttgcaatgagggccatggatgagcttgtcaagatggcgcagatgaatgag
ccgctgtggattccaagcgtttcctcacctggttcatcaactgtggagacactgaactgg
aaagagtactcgaagacatttttgccatgcgttggggtgaagccgattggttttgtgtcc
gaggcctctagggagtctggcattgtcaacattgacagtgctgctcttgtggagttcttc
atgaatgagagacggtggtctgacatgttctcgtgcattgttgccaaggcatcaactatt
gaggaaatctcagctggggttgcgggaagcagagatggtgcattgctgcttatgcaggca
gagctacaagtgctttcacctcttgtccctagaagggaggtgacgtttcttaggttctgc
aatcagcttgctgagggtgtgtgggctgttgtggatgtttccgttgatggactggagaag
gatcagtgcctagttacgagcatgaattgccggaggctgccttcaggttgtgtggtgcaa
gagaccccaaatggctgcaaggtcacatgggttgagcatacagaatatcatgaagcatcc
gtacaccagctttaccggcctcttctgcgctctggcctcgcccttggtgcagggcggtgg
cttgcaacgctgcaacgccagtgcgagggcttggccatcctcatgtcatctgttgcaatg
ccagagcatgactcatcagctgttgcgctgggagggaaacggagcttgttgaagttggca
cagaggatgatggagaacttctgtgcaggggtaagtgcatcatccgctgaatggaacaaa
ctggatggcttaacaggctgcatgcggaaagatgttcgcgtcatggtacggaagagtgtg
gatgaacccggggtgccaccaggtgtggttctcagtgccgccacagcagtctggatgcct
gtgacacctgaacggctcttcaacttccttcgcaatgagggtctgcgtgctgaatgggac
atactcagcaacggtggcccaatgcagcagatgttacgcattgccaaggggcaactggat
ggcaactctgtaactctactgagagctgatcctacaaacacccacctgaacagcatcttg
attcttcaagagacttgcaccgacaaatccggtgcaatggttgtgtacgccccagtagac
ttccctgcaatgcagcttgtgatgggtggaggagactcgacatatgtggcactcttgccg
tctggtttcgccattctgcctggtgggtccagcgctggtggagttggacacaagacaagt
ggatcactgctcacggttgcattccagatccttgtcaacagccagcccactgcaaagctc
accctggagtcagttgacaccgtgtacagcctcatctcctgttccatcgagaagatcaag
gcctcgcttcactgcgaggtctga
DBGET
integrated database retrieval system
