Panicum virgatum (switchgrass): 120682498
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Entry
120682498 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120682498
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120682498
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120682498
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120682498
03036 Chromosome and associated proteins [BR:
pvir03036
]
120682498
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120682498
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120682498
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120682498
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B56
DUF349
ARM_CPL3
TOF-1-like_helical
Motif
Other DBs
NCBI-GeneID:
120682498
NCBI-ProteinID:
XP_039820385
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All DBs
Position
7N:complement(34731689..34736061)
Genome browser
AA seq
513 aa
AA seq
DB search
MIKQILGRLPRKPGKAGDSRDAAAGVAAGNGTEPSNSYSVARRVDSGNKRAGNGDYPVPP
GVTPNPVMNGAVLYHSNEPLPAFKDVVASEKQNLFVKKVNLCCALYDFTDPTKNLKEKEV
KRQTLMELVDYVTSANGKFSEVVMQEITKMVSINLFRSSNPAPRENKAIEGVDLEEDEPL
MDPAWSHLQIVYEVFLRFVASQETDAKLAKRYIDHSFILRLLDLFDSEDPRERDYLKTIL
HRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLF
LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSSKEVMFLG
ELEEVLEATQLAEFQRCMVPLFRQIARSMNSSHFQVAERALFLWNNDHIENLIKQNYKVL
LPIIYPALERNTRNHWNQAVRSLTLNVRKIFSDHDSAFFEECVQRFNDEELKQEETDSKR
EALWKRLEEMATSKLGENHPSGTPNGKSSQAAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgattaagcagatccttggccggctgccgaggaagccggggaaggctggggatagccgt
gatgctgctgctggggtggctgcggggaatggtacagagccttcgaattcttacagtgtt
gccaggagagtggactcggggaacaagagggctggaaatggggattacccagtgccacct
ggggtaactcctaatccagtgatgaatggggctgtgctgtatcactccaatgagccgctg
ccagccttcaaggatgtggtggcgtccgagaagcagaatttgtttgtcaagaaggtgaac
ctgtgctgcgccctttatgacttcacggatccgacaaagaacctgaaggaaaaggaggtg
aagcgccagacgcttatggagctggtcgactacgtcacttcggcgaatggcaagttctcg
gaggtcgtcatgcaggagatcaccaagatggtgtcaattaacttgttccggagctccaac
cccgcgccccgtgagaacaaggccattgagggagttgatttggaggaggacgagcccctc
atggaccctgcatggtcgcacttgcagattgtgtatgaggttttcttgaggtttgttgca
tcgcaggagacagatgcaaagctcgccaagagatacatagatcattccttcattcttagg
ctactagatctttttgactcagaggaccccagggaaagggactatctaaagacaatactt
cacagaatatatggtaaattcatggttcatcgcccattcatcaggaaagcaattaacaac
atattctacaggttcatatttgaaacagaaaagcataatggtattgcagagctgttggag
atcctgggcagtattattaatggttttgcccttcctcttaaggaagaacacaagttgttc
cttgttcgtgcgctgatccctcttcacaagccaaagtgtgtatctatgtaccatcaacag
ctatcttattgcatcacacagtttgttgagaaggactgcaaacttgctgacacagttatt
aggggcttactgaaatactggcctgtgacaaacagttcaaaggaggtgatgttcttgggt
gagttagaagaggttttagaggcaacacagcttgcggagtttcaaagatgcatggttcca
ctcttccgtcagattgcccgtagcatgaacagctcccatttccaggtggcagagcgggct
ctttttctctggaacaatgaccatattgaaaacctaattaagcaaaactacaaggtgcta
ttacctatcatctatccagcactcgagagaaacaccagaaatcactggaaccaagctgtt
cgtagcctgacattgaacgtacgcaagatcttctctgatcatgattctgcattcttcgag
gagtgcgttcagaggttcaatgatgaggaacttaagcaggaggaaaccgattcaaagcga
gaagccctgtggaagcgcctagaggaaatggccacctcaaaacttggtgaaaaccatccc
tctggcacacccaatggcaaatcgagtcaagctgctggctag
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