Panicum virgatum (switchgrass): 120682523
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Entry
120682523 CDS
T07260
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1A-like
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120682523
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120682523
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
TEX13
RPW8
Pol_alpha_B_N
Drf_FH3
FlgT_M
Motif
Other DBs
NCBI-GeneID:
120682523
NCBI-ProteinID:
XP_039820412
LinkDB
All DBs
Position
7N:complement(47020603..47023665)
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AA seq
528 aa
AA seq
DB search
MNSAFSEDILADKLAKLNNTQQCIETLSHWCIYHRKNAEQIVQTWDKQFHSSSKEQKVPF
LYLANDILQNSKRNGTEFVEEFWKVLPGALKDVTENGDDRGKTVASRLVDIWQERRVFGS
RAGGIKDVMLGAAPLPVLDMTKKRSHSSAIKIVKRDSRSVKLKLGIGGTAEKIVSALHTV
HSEHADEDADLEKCKTSMRHVGKLEKDVDSACSKSEDPRREVLCAELKDEEANMKKCIEK
LKVVEANRAAVVSELKEALQEQESELEKVRTQLQLAEAMVHEASNMQRRLKNEPTIPLPN
AASSAEQGKTLPNGQAKEQQKTAAAILADKIAASSNSQQILQSALSKFAAEEAKNSSETR
SDKRQKTEQPLQVPSVGNAAAFVPMPQVVATTAQQQPQAMLVQQAPMQSQGPAPQPQYNI
YQAPSQQFVQQPGGVMMGMPYNMSTMTPTPPPPPPQMMNLGRPSPTAPQPQMAIMPQAQP
PALPMLQQQMPMSLAPQMQFALQQPGVPPFRPMQPPPPGMQYFHPQSQ
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcgcgttcagcgaggacatactcgctgacaagctcgccaagctcaacaacact
cagcaatgcatcgagacgctgtcgcattggtgcatttatcatagaaagaatgcagagcaa
atcgtccagacttgggacaagcaattccacagctctagcaaggagcagaaggtccctttc
ctttatcttgctaatgacatcttacagaacagcaagcgcaatgggacagagtttgtagaa
gaattttggaaggtactccctggagcgcttaaagatgtaactgagaatggtgatgatcgt
ggtaagacggtggcatctaggctggttgacatatggcaagaacggagagtttttggttca
cgtgctgggggcataaaggatgtgatgcttggagctgctcctcttcctgttttagatatg
acaaaaaagcgctctcacagttcagccataaagattgttaaaagagattcgcgttctgta
aaacttaaactaggtatcggaggaactgcagagaaaattgtgtctgcattgcatactgtt
cacagcgaacatgcagatgaagatgctgacctggaaaaatgcaagacttctatgcgtcat
gttggaaagttggagaaggatgttgacagcgcatgtagcaaatctgaagatcctcgtcgt
gaggttctttgcgcagaattaaaagatgaggaggctaacatgaaaaaatgcattgaaaag
ctgaaagtagttgaagcaaatagagcagctgttgtgtctgaattgaaggaggcattgcag
gagcaggaatccgaattggagaaagtccgcactcagttacagctggctgaagcaatggta
catgaagcctccaacatgcaacggagactcaagaatgagccaaccattccgctgcccaat
gcagcatcgtcagcagagcaaggaaagacgcttcccaatgggcaggcaaaggagcagcag
aagacagctgctgctatcctcgcggacaagattgcagcatcatcaaactctcagcagata
ctgcagtctgcactttccaagtttgctgctgaagaagcgaagaattcatctgaaacacgc
tcagataagaggcaaaagactgagcaacccttgcaggtaccaagcgttgggaatgctgct
gctttcgttcccatgccacaagtggttgccacaacagctcagcagcagccccaggcaatg
ctagtacagcaagcacctatgcagagccaaggccctgcaccccagccccagtacaatatc
taccaggctccttcccagcagtttgtccagcaacctggaggtgtgatgatgggcatgcct
tacaacatgagcaccatgaccccaaccccgcctccaccaccgccgcagatgatgaaccta
ggaaggccctcacccacagcaccccagccgcaaatggctatcatgccgcaggcacagcct
ccagcgctgcccatgcttcagcagcagatgccgatgagcctggcaccgcagatgcagttc
gcccttcagcagcccggtgtaccgcctttcaggccgatgcagccgcccccacctggaatg
caatacttccacccccaatctcagtga
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